| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3907 |
|---|
| Symbol | |
|---|
| ID | 3961547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 4363903 |
|---|
| End bp | 4364931 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637918732 |
|---|
| Product | CRISPR-associated Cas1 family protein |
|---|
| Protein accession | YP_525137 |
|---|
| Protein GI | 89902666 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03640] CRISPR-associated endonuclease Cas1, DVULG subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.63849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTCC TCAACACCCT CTACGTCACC ACGGCGGACA CTTATCTGCG TCTGGACAAC
GACACCCTGC GCGTGGAGGT GGAGCAAGAA ACCAGGCTAC GTGTGCCACT GCACCACTTG
AGCGCAGTGG TGTGTTTCGG TCACACGGGT TTGTCGGCAC CGCTCATGCA CCGCCTGGCT
GAAGGCGGCA TTGCGCTGGT GTTGCTGGAT GACAATGGGC GTTTCAAAGC AAGGTTAGAG
GGCGCAGTCA CAGGCAATGT TCTGCTGCGC CAAGCTCAGT TTGGGCGTGT GGCAGACCCC
GCGTTTACGC TGGACATGGC ACGCGCCTGT GTGGCGGGCA AGATCAAAAA CACCCGGCAG
GTGTTGCAAC GCGGTGCCCG CGAAGCCAAG TCAGAAGACG AAGCCCAGGT ATTAACCCGC
CTGGCCGACG ACCTGGCTGC CAGTTTGCGC GCGCTCACCG AGGCCACCAG TCTGGACGTC
TTGCGGGGCA TAGAGGGTGA GGCCGCGCGG CAGTATTTCA TTGGCCTCAA TTTGCTGGTG
CGCCCTGAGT CGCGCGCGGT CTTCCAGATG GATGGGCGCA CGCGTCGCCC GCCGCGTGAC
CGCTTCAATG CCATGTTGTC ATTCTTGTAT TCCATGTGGA TGAACGACTG CCGTAGCGCG
CTGGAGGCAG CCGGGCTGGA CCCGCAAGTG GGTTTTTTGC ATGCCTTGCG ACCGGGCCGC
GCTGCACTGG CGCTGGATTT GATGGAAGAG TTTCGCCCCT GGGCTGATCG CTTGGCCCTG
ACGCTCATCA ACCGAGGTCA GTTGACTGCT GATGATTTTG TTTTGCGTGA AGGCGGTGGC
GTGTTACTGG AGCCGGATGC GCGCAAGGCG GTGGTGGTGG CGTATCAAGA ACGCAAGCGC
GACGAGATCA ATCACCCGCT GCTGGCGCAG TCTGTCCCCT TGGGCCTGGT GCCGCTGGTG
CAGGCACGCT TGATGGCGCG CGCTTTGCGC GATGACGGTG CACCGTATGT GCCGTTTGTG
GCCAAGTAG
|
|---|
| Protein sequence | MQLLNTLYVT TADTYLRLDN DTLRVEVEQE TRLRVPLHHL SAVVCFGHTG LSAPLMHRLA
EGGIALVLLD DNGRFKARLE GAVTGNVLLR QAQFGRVADP AFTLDMARAC VAGKIKNTRQ
VLQRGAREAK SEDEAQVLTR LADDLAASLR ALTEATSLDV LRGIEGEAAR QYFIGLNLLV
RPESRAVFQM DGRTRRPPRD RFNAMLSFLY SMWMNDCRSA LEAAGLDPQV GFLHALRPGR
AALALDLMEE FRPWADRLAL TLINRGQLTA DDFVLREGGG VLLEPDARKA VVVAYQERKR
DEINHPLLAQ SVPLGLVPLV QARLMARALR DDGAPYVPFV AK
|
|---|
| |