| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3893 |
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| Symbol | |
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| ID | 3961514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4344021 |
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| End bp | 4346582 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637918718 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_525123 |
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| Protein GI | 89902652 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTATTTGT TCAATTTGTT GCCCGCCGCC TGGCGCCTGC GTGTGCCGCG TACCTTGCTG
GCGCTTTGCG CGCTGGCCCT GCTGACTGCG CCAACGCTGG CGCGCGAGGT GCGCGTGGGC
GTCTACCAGA ACGAGCCCAA GATATTCATG GGCGCCGATG GCCAGCCCAG CGGCATCCTG
GGCGACCTGC TGGTGGCGAT GGCCCGGCTG GAGGGTTGGA CACTCAAGCC GGTGCCCTGT
GAATGGGCGG CCTGCCTGGA CGCCTTGCAG GCGGGCAATA TCGACCTGAT GCCCGACCTG
GCTTTGAGCG AGCAGCGCTT GCAGATTTTT GACGTTCACA AGATTCCCTC GCTCTTGAGC
TGGTCGCAGC TTTACAAACA CAGCGGCGTC CCGATCAGCT CCATGCTGGA CCTCAAGGGC
AAGCGGGTGG CGGTGCTGGC GGGGTCGGTG CAGCAGGCGT ATCTGCAGAA CCTGCTGAGC
AGTTTTGCTG TGCAAGCTGA ATTGGTGCCC GTCCAATCGC TGGAGGAGGC TTTTAAACTG
ACAGCCGCGC ACCAGGTCGA TGCGGCGGCG ACCAACCGCT TTTTTGGCGA TCGACGTGCC
GCCAGCTACC AACTGGACGC GACACCGATC CTGTTTCAGC CAGCCCAACT TTTTTACGCC
ACCGCCAAGG GGCGCAATGC GGATTTGTTG GTCGCCATCG ATCGGCATCT GGGGCAATGG
CAGTCGCAAG CCGACTCCGA ATACTTCACG GTGCTCAAGC GCTGGATCGA GGCGCCGCCG
CAATTTTCTG TGCCCGCCTA TTTGTGGTGG AGTCTGGGTG CTTTGGCGCT GCTGCTGGCG
CTGGCGCTGG CCGGCAGCGC GCTGCTGCGC CGTCAAGTGG CCGACAAAAC CCGCCATTTG
CGCGCCAGCG AAGACCGGCT CGCCACCATT CTCAACAGCG TTGATGCCTA TATTTATATC
AAAGACATGG AGTTGCGCTA CCAGTACGCC AACCGCAAGG TCTGCGAGTT GTTTGACCGG
CCCCTGGCGC AAGTGGTGGG CAGCACTGAC AGCGAGTTCT TTGATGCCAC CACGGTCGAG
CGCTTACGCA TCAATGACAA GCGGGTGATC GACAACGGCG AGCGGGTCGA GGCCGACGAG
GTCAGCCGCA GCCTCGATGG CAGCCGGGAA CAAACCTACC TGTCGATCAA ATTGCCCCTG
CGCCAACCCG ATGGCAGCAT CTACGCCCTG TGCGGCATTT CCACCGACAT TACCGAACAC
AAGCGTTCTG AGGACGCCAT TCACCAGCTC GCTTTTTACG ACCCCCTGAC GCTGCTGCCG
AATCGCCGTT TCTTGATGGA GCGTCTGCAG CAAACCCTGA AAGCCAATGA GCGTCAACAA
CAGTGCGGCG CTCTGCTGTT CATTGACGTT GACAATTTCA AAGACCTCAA CGACACGCTG
GGGCACGCGA TGGGTGACGA GCTGTTGCGC CAGATGGCGG TGCGCTTGAG CACCTGCACG
CGCGCCGAAG ATACGCTGGC GCGTCAGGGC AGCGATGAAT TTGTGCTGCT GCTGTGCGAC
CTGAGCCCCG ATCTGGACGC GGCGCTGGAG CAAACCCGGC ATGTCGCTCA AAAAATACTG
CAACACATCG CTGAACCCTA CCTGCTGGAA ACCCGCCACT ACCAGAGCAC GGTCAGCATT
GGCATTGCCA TGTTTGGCGA CACGCCAACC AGCCGAGACG AGTTGTTCAA GCAGGCTGAC
CTGGCGATGT ACCGGGCCAA GGCCGAGGGT CGCAACGCCT TGTGCTTTTT TAACCCCGCC
ATGCAGGCCC AGGTGACAGC CCGCACGGCG ATCGAGGCCG ATCTGCACCA GGCGCTGGCG
CGATCCGAGT TTGTGCTGTA TTACCAGCCG CAGGTGAACA TCGACGGCCA GCAGTTCGGG
GTCGAAGCCC TGGTGCGCTG GCAGCATCCG CAGCGCGGAC TGGTGCCGCC GCTGGAGTTC
ATCCCGATTG CCGAGTCGAC CGGCCTGATC CTGCCCCTGG GGCGCTGGAT TTTGAGTACG
GCCTGTCGAC AACTGGTGGC GTGGGCGGCC AGCCCTGAGC AGGCGCATTG GAGCATTGCG
GTCAACGTCA GTGCGCGCCA GTTTCGCCAG AGTGACTTTG TGCAGACGGT CGAGCAAGTA
CTGCGCGATA CCGGCGCCAA CCCGCAGCGC CTGGAGCTGG AGCTGACCGA GAGCCTGCTG
GTCGACGATG TGGAGGTCGT GATTGCGCGC ATGAGCGCGC TCAAGGCGCT GGGTGTGCGC
TTCTCGCTCG ACGATTTTGG TACTGGCTAC TCCTCGCTGA GCATGCTCAA ACGCCTGCCG
CTGGACCAGC TCAAGATTGA CCGCTCGTTT GTGCGCGATT TACGCCACGA TCCGCAGGAT
GCCAACATTG TCAAGGCCAT TGTTACCTTG GGGTTTGCCA TGAACCTGCA GGTTATTGCG
GAAGGGGTCG AGACAGCCGA GCAACGTGAT GCACTGGTGA ACCTGGGCTG CACCCATTTT
CAGGGCTATC TGTTTGGCCG CCCGGCGCCG GCGCCGGCCT AA
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| Protein sequence | MYLFNLLPAA WRLRVPRTLL ALCALALLTA PTLAREVRVG VYQNEPKIFM GADGQPSGIL
GDLLVAMARL EGWTLKPVPC EWAACLDALQ AGNIDLMPDL ALSEQRLQIF DVHKIPSLLS
WSQLYKHSGV PISSMLDLKG KRVAVLAGSV QQAYLQNLLS SFAVQAELVP VQSLEEAFKL
TAAHQVDAAA TNRFFGDRRA ASYQLDATPI LFQPAQLFYA TAKGRNADLL VAIDRHLGQW
QSQADSEYFT VLKRWIEAPP QFSVPAYLWW SLGALALLLA LALAGSALLR RQVADKTRHL
RASEDRLATI LNSVDAYIYI KDMELRYQYA NRKVCELFDR PLAQVVGSTD SEFFDATTVE
RLRINDKRVI DNGERVEADE VSRSLDGSRE QTYLSIKLPL RQPDGSIYAL CGISTDITEH
KRSEDAIHQL AFYDPLTLLP NRRFLMERLQ QTLKANERQQ QCGALLFIDV DNFKDLNDTL
GHAMGDELLR QMAVRLSTCT RAEDTLARQG SDEFVLLLCD LSPDLDAALE QTRHVAQKIL
QHIAEPYLLE TRHYQSTVSI GIAMFGDTPT SRDELFKQAD LAMYRAKAEG RNALCFFNPA
MQAQVTARTA IEADLHQALA RSEFVLYYQP QVNIDGQQFG VEALVRWQHP QRGLVPPLEF
IPIAESTGLI LPLGRWILST ACRQLVAWAA SPEQAHWSIA VNVSARQFRQ SDFVQTVEQV
LRDTGANPQR LELELTESLL VDDVEVVIAR MSALKALGVR FSLDDFGTGY SSLSMLKRLP
LDQLKIDRSF VRDLRHDPQD ANIVKAIVTL GFAMNLQVIA EGVETAEQRD ALVNLGCTHF
QGYLFGRPAP APA
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