Gene Rfer_3868 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3868 
Symbol 
ID3961470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp4319084 
End bp4322740 
Gene Length3657 bp 
Protein Length1218 aa 
Translation table11 
GC content62% 
IMG OID637918693 
Productindolepyruvate ferredoxin oxidoreductase 
Protein accessionYP_525098 
Protein GI89902627 
COG category[C] Energy production and conversion 
COG ID[COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCCT CATTGCCCGA CCTTCTACCC CAAGCGCTGG CCAGTGCCAC GCTGGACGAC 
AAATATGCGC TGGACAAAGG TCGTGCCTTC ATGAGTGGCG TGCAAGCCCT GGTCAAACTG
CCGATGTTGC AGCAGGCGCG TGACCAACTG CTTGGCAAAA ACACGGCTGG GTTTATCAGC
GGCTACCGCG GTTCGCCGCT GGGCAATTAC GACCAGGCAC TGGTCAAGGC GGAGAAACAC
CTCAAGGCGA AGAGCATCGT TTTCCAGCCT GGTGTTAATG AAGAACTGGC CGCCACCGCC
TTGTGGGGCA CCCAGCAGCT CGGTTTCGCA CCGCCCGGCT CCAACAAGTT TGATGGTGTG
TTTGGCATCT GGTACGGCAA GGGCCCGGGC GTGGACCGCT GTGGCGACGT CTTCAAGCAC
GCCAATATGG CGGGCACCAC GCCGTGGGGC GGCGTGATCG CCGTGGCGGG CGACGACCAC
ATCTCGAAAA GCTCGACCGC AGCGCACCAG AGCGACCATA TTTTCAAGGC CTGCGGTACG
CCGGTGTTTT TTCCGGCCAG CGTGCAGGAG ATTCTCGATC TGGGTCTGCA TGCCTTTGCC
CTGAGTCGTT TTTCCGGGGT CTGGGCCGGC ATGAAGACGA TTCAGGAGGT CGTCGAATCC
AGCGCTACCG TGATCATTGA TCCGAACCGG GTGCGGATCA AAATTCCGAC CGATTTCGAG
ATGCCGCCGG GCGGTGTGCA CATTCGCTGG CCCGATGCAG CCCTGGCGCA GGAGGCGCGC
CTGTTTGACT TCAAGTGGTA CGCGGCGCTG GCCTATGTCC GGGCCAACCG GCTCAACTAC
AACGTGATCG AGGGCCCGAA TGACCGTTTT GGCCTGATTG CCAGCGGCAA GGCCTTCAAC
GACACGCGCC AGGCTTTGCT CGATCTGGGG CTGGACGATG CGACCTGCCA GCGTTTGGGC
ATCCGTTTGC ACAAGGTCGG CGTGGTGTGG CCGCTGGAAG CCCAGCTGAC GCGCGAATTT
GCCACCGGCC TGCAGGAAAT TCTGGTGGTG GAAGAAAAGC GCCAGATCAT TGAGTACCAG
CTGAAGGAAG AGCTGTACAA CTGGCGTGCT GACGTTCGGC CCACCGTGCT GGGCAAGTTC
AACGAGGTTG ACAGCGGCTC GGCAGGCTCC CACTATGGCA GCGGTGGCGA GTGGTCGATG
CCGAACCCGA GTGCCAATAC GCTGTTGCGC GCCAATGCCG ACTTGTCGCC CGCCCTCATT
GCCCGGGCCA TCGCCCAGCG CTTGAAGAAA ATGGGCCTGG ACGCCGACAC GACGGCGCGC
ATCGACGCCC GACTGGCTAT TCTGCAGGCC AAGGAGCAGG CCATGCAGAT GCTTGAAGTG
AGCAGCGTCA AGGGGGCCGA GCGCCAACCC TGGTTCTGCT CCGGCTGCCC GCACAACACC
TCGACCAAAG TCCCCGAGGG CTCGCGTGCC ATGGCCGGCA TTGGCTGCCA CTTCATGGCG
ATCTGGATGG ACCGTGCCAC CGTGGGCTTT ACCCAGATGG GTGGCGAGGG TGTGCCCTGG
GTCGGCCAGC AGCCCTTCAG CACCGAACAG CACGTGTTTG CCAACCTGGG CGATGGCACC
TACTTTCACA GCGGGCTGAT GGCGATTCGC CAGGCTATCG CGGCGGGCGT GAACATCACC
TACAAGATTT TGTACAACGA CGCGGTTGCC ATGACCGGTG GCCAGCAAAT TGGCGAGCGC
CCGGAAGGAC ACTCCGTGGT GCAGATTGCC CAGAGCATGC GGGCCGAAGG TGCTATCAAA
ATAGTGGTGG TGACGGACGA ACCGGACAAG TACGCCCACA TCACCGGCTT GCCCGAGGGC
ATTGCCGTTG AACACCGCGA CGAACTCGAT CGCCTCCAGC GCGAGTTCCG GGAAATCAAG
GGCACCACTG TCATCATCTA TGACCAGACC TGTGCCACCG AAAAACGGCG CCGGCGCAAG
CGTGGCAGTC TGGTCGATCC GGCCAAACGG GTTGTCATCA ATGAATTGGT GTGTGAGGGT
TGTGGCGACT GCGGCGTGCA GAGCAACTGT CTGAGCGTGG AGCCGCTGGA GACCGAGTTT
GGCCGCAAGC GCCAGATTAA CCAAAGTACT TGCAACAAGG ACTATTCGTG CGTCAAGGGG
TTTTGCCCGA GTTTTGTCAC GGTAGAGGGC GGTCAGCTCA GAAAGAAATC AAAGGGCCAG
GGACCGTCAC CGTTTGATGC GGCATGGGGC GCGTTGCCGG AGCCGACGAT GGCTTCGACG
ATCGGCCAGC AAAGCCAGGT GTGGGGCATT GTCGTCGCCG GTGTCGGCGG CACCGGCGTC
ATCACCATTG GCCAGTTGCT GGGCATGGCG GCGCATCTGG AGGGCAAGGG CATCGTGACG
CAAGATGCGG GCGGCCTGGC GCAAAAAGGC GGCGCCACCT GGAGCCACGT GCTGATCGGC
GCCTCACAAG ACGCCATCCG CACCACGCGC GTGGGCATGG CGGGGGCCGA CCTCATCATC
GGCTGCGACC CCGTTGTGGC GGCCAGCACG GAAACCCTGC TGCGCATGCT CAGGGGGCGC
ACGCAGGTGG CGCTGAACTC CCACGCCACG CCAACGGCCG CTTTTGTCAA AAACGCCAAC
TGGCAAAACC CGGCCGAGGC CTGCGTCAGC GACATCGTCA AAACAGTGGG ACTCGATGCG
GTGGCCGCAT TCAACACGGA GCTCGCGGCC ACCCGTCTGA TGGGCGACAG CATTTACACC
AACCCGATGC TGCTCGGCTT TGCCTGGCAA AAGGGGTGGA TTCCGCTGCA GCAAGCCTCG
CTGCTGCGCG CCATCGAGCT CAATGCGGTG GCGGTCGAGC AAAACAAGAC CGCGTTTACA
TGGGGCCGCC GCGCGGCGCA CGATCCTGCT GCGGTTGACG AGCTGCTCAA CCCGGGGCAA
GTGGTGACTC TTGCCAAGCG CAGTTCACTC GATGAGTTGA TTGCCAAACG GGTTGTGTTT
CTGACGGCGT ACCAGAATGG CGCTTACGCT GAACGCTACA AATCCTTTGT GCAGAAGGTG
AAAAGTGTGG ATGAGTCGGT CGGCCCCAGG AGCCTGGCTC TGAGCGAGGC GGTGGCGCGC
TACCTGTTCA AGTTGATGGC CTACAAAGAT GAGTATGAGG TGGCGCGTTT GCATAGCCAC
AGCGATTTCA ACGCCAGGAT AGCCGCCTTG TTTGAAGGTG ATTTCAAGAT TCACTACCAC
TTGGCGCCCC CCTTGCTGGC CAAAAAGAAT ACGCGCGGCG AGTTGCAAAA GCGGCCCTAC
GGCCCCGCCA CGTTGCTGGC CTTCAAGGTG CTGGCTCAGT TCAAGGGCCT GCGCGGCACG
GCGCTGGATA TTTTTGGCAA GACCGAGGAG CGTCGCCAGG AGCGCGCCCT GATCACCGAG
TACCAGGCCA GCATCAATGA GTTGCTTGAC GTGCTGGGCC GCAACCAGTC AGGGGGGCAG
TCGGGTGAAG GCGAGCAGAC GCATTACCAG CTGGCACTGG ACATTGCCCG TATTCCGGAG
CAGATCCGGG GGTTTGGACA CATCAAGGCG CGCCATCTGA GCGCGGCGCG TCAAAATTGG
CAAGAGTTGA TGACCCGGTT TCGGGGCTTC GTGGCCCCGC ATACAATGCC CGGTTGA
 
Protein sequence
MNASLPDLLP QALASATLDD KYALDKGRAF MSGVQALVKL PMLQQARDQL LGKNTAGFIS 
GYRGSPLGNY DQALVKAEKH LKAKSIVFQP GVNEELAATA LWGTQQLGFA PPGSNKFDGV
FGIWYGKGPG VDRCGDVFKH ANMAGTTPWG GVIAVAGDDH ISKSSTAAHQ SDHIFKACGT
PVFFPASVQE ILDLGLHAFA LSRFSGVWAG MKTIQEVVES SATVIIDPNR VRIKIPTDFE
MPPGGVHIRW PDAALAQEAR LFDFKWYAAL AYVRANRLNY NVIEGPNDRF GLIASGKAFN
DTRQALLDLG LDDATCQRLG IRLHKVGVVW PLEAQLTREF ATGLQEILVV EEKRQIIEYQ
LKEELYNWRA DVRPTVLGKF NEVDSGSAGS HYGSGGEWSM PNPSANTLLR ANADLSPALI
ARAIAQRLKK MGLDADTTAR IDARLAILQA KEQAMQMLEV SSVKGAERQP WFCSGCPHNT
STKVPEGSRA MAGIGCHFMA IWMDRATVGF TQMGGEGVPW VGQQPFSTEQ HVFANLGDGT
YFHSGLMAIR QAIAAGVNIT YKILYNDAVA MTGGQQIGER PEGHSVVQIA QSMRAEGAIK
IVVVTDEPDK YAHITGLPEG IAVEHRDELD RLQREFREIK GTTVIIYDQT CATEKRRRRK
RGSLVDPAKR VVINELVCEG CGDCGVQSNC LSVEPLETEF GRKRQINQST CNKDYSCVKG
FCPSFVTVEG GQLRKKSKGQ GPSPFDAAWG ALPEPTMAST IGQQSQVWGI VVAGVGGTGV
ITIGQLLGMA AHLEGKGIVT QDAGGLAQKG GATWSHVLIG ASQDAIRTTR VGMAGADLII
GCDPVVAAST ETLLRMLRGR TQVALNSHAT PTAAFVKNAN WQNPAEACVS DIVKTVGLDA
VAAFNTELAA TRLMGDSIYT NPMLLGFAWQ KGWIPLQQAS LLRAIELNAV AVEQNKTAFT
WGRRAAHDPA AVDELLNPGQ VVTLAKRSSL DELIAKRVVF LTAYQNGAYA ERYKSFVQKV
KSVDESVGPR SLALSEAVAR YLFKLMAYKD EYEVARLHSH SDFNARIAAL FEGDFKIHYH
LAPPLLAKKN TRGELQKRPY GPATLLAFKV LAQFKGLRGT ALDIFGKTEE RRQERALITE
YQASINELLD VLGRNQSGGQ SGEGEQTHYQ LALDIARIPE QIRGFGHIKA RHLSAARQNW
QELMTRFRGF VAPHTMPG