Gene Rfer_3858 details

Gene Information

• Locus tag: Rfer_3858
• ID: 3961460
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 4306596
• End bp: 4308407
• Gene Length: 1812 bp
• Protein Length: 603 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637918683
• Product: respiratory-chain NADH dehydrogenase domain-containing protein
• Protein accession: YP_525088
• Protein GI: 89902617
• COG category: [C] Energy production and conversion
• COG ID: [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGCCCGA ACCGCCAATC CTCCCTGGCC GCAGCACCCG AGTTGCAGCG CCTGCTGGCG 
CGCTACCCGC CTGACCCACA TGCCTTGCTG CAGATTCTGC GCGAACTGCA GGCCCTGCAA 
GGCTGGCTGG CGCCTGACGC CCTGGGCCAG GTTGCCAGCG AACTCGGTTT GACGCTGGCG 
CAGGTGCAAG GGGTGGCTGG TTTCTATCGC TTCTTGCACA CCCGGCCGGT TGGTGCCTAC 
CGCGTGCTGT TCAGCGACAA CGTGACCGAC CGCCTGCTGG GCAGCGAGGC ACTGCTGGCC 
GACCTGTGCC AGCGCCTGGG GGTCGTACCC GGTCAGCTCA GTTTTGATGG CCTGGTCAGC 
GTGGAGCGGA CCTCCTGCAC CGGGCTGTGC GATCAGGGGC CGGCCTTGCT GATCAACCAC 
CATCAGGTGC TCACTCGCCT GGACCCTGCC CGGGTGGCGC ACATGGCCGA GCTGATCCGC 
GCGCGCGTGC CGGTGCCGCA ATGGCCCGCC GCGTGGTTTG AGGTGCAGGA CAACATCCGA 
CGGGCCGATG TGCTGCTCGG CGCGCCTTGT GCGCCGGGGG CTGCGTTGAC TCAGTCGCTG 
GCGCGTGGTG CTGACGCGAC GCTGGCCGAG ATCAAGCGCT CCAATTTGCG CGGGCGCGGC 
GGCGCCGGTT TTGCCACCGG CCTCAAATGG GAGCTGTGCC GCCAGGCCCC CGGCACGGAG 
CACATCGTGG TGTGCAACGC CGACGAAGGT GAACCCGGCA CCTTCAAGGA CCGCGTGCTG 
CTGAGCCGTC AGGCTGACGC GGTGTTCGAG GGTATGACCG TCGCCGCCCA CGTGCTGGGC 
GCGCGCCGCG GCTTTCTTTA CCTGCGCGGC GAATACCGCT TCCTGCTGGA GCCCCTGCAG 
GCCGTTTTGC AGCGCAGGCG CGCGGAGCAG CTGCTGGGCA CCCACATCCT GGGGCAGGCC 
GGTTTCGATT TCGACATCGC CATTCACGTC GGCGCTGGCG CCTACGTCTG CGGCGAGGAG 
TCGGCGCTGA TCGAGTCGCT CGAAGGCAAG CGCGGCACGC CGCGCATCCG CCCGCCATTC 
CCGGCCGAGC ACGGCTACCT GGGGCATCCG ACCCTGGTCA ACAACGTGGA AACTTTTTGC 
GCCGTGGCGC ACATCGCGCA GCACGGCGGC GCGCTCTGGG CCGGCATCGG CACGCCCAAA 
TCGACCGGCA CCAAGATTCA CTCGGTGTCG GGCGACTGCG CGCGCCCGGG CCTGTACGAA 
TACCCCTTGG GCACGCCGGT GAGCCGCCTG CTGGCGGACT GCGGCGCACG CGACACGCAG 
GCGGTGCAGG TCGGCGGGCC GTCCGGCGTG TGCCTGGCGG CGGACGAGTT TGAGCGCCGC 
ATCGCGTTTG AAGACGTGCC GACGGCGGGC GCCTTCATGG TGTTTGACCG CTCGCGTGAC 
ATGTTCGAGG TGGCACGCGG TTTTGCGCAT TTTTTTGCCC ACGAGAGTTG TGGCTTCTGC 
ACCCCGTGCC GGGTCGGCAC CGCCTTGCTG GTCAAGCGCA TGGACAAGCT CGCGGGCGGC 
CATGGCTCGC GCGACGACCT TGATGTGCTG TTCGAGTTGG ATCGCTTGCT GCACAGCACC 
ACCCATTGCG GCCTGGGGGC GAGCGCCTGC AACCCCTTGC GCGATACGGT GCTGAAGTTT 
CGCCCGGCCT ACGAGCAACG CTTGCAGTCG CTCGATTTCG AGCCGGGTTT TGACCTCGAC 
GCCGAGCTGT CGATTGCCCG GCGCATGACC GGCCGCGACG ACGCCGCCGC GCATCTGGAG 
AACCGCACAT GA 

 

Protein sequence

MCPNRQSSLA AAPELQRLLA RYPPDPHALL QILRELQALQ GWLAPDALGQ VASELGLTLA 
QVQGVAGFYR FLHTRPVGAY RVLFSDNVTD RLLGSEALLA DLCQRLGVVP GQLSFDGLVS 
VERTSCTGLC DQGPALLINH HQVLTRLDPA RVAHMAELIR ARVPVPQWPA AWFEVQDNIR 
RADVLLGAPC APGAALTQSL ARGADATLAE IKRSNLRGRG GAGFATGLKW ELCRQAPGTE 
HIVVCNADEG EPGTFKDRVL LSRQADAVFE GMTVAAHVLG ARRGFLYLRG EYRFLLEPLQ 
AVLQRRRAEQ LLGTHILGQA GFDFDIAIHV GAGAYVCGEE SALIESLEGK RGTPRIRPPF 
PAEHGYLGHP TLVNNVETFC AVAHIAQHGG ALWAGIGTPK STGTKIHSVS GDCARPGLYE 
YPLGTPVSRL LADCGARDTQ AVQVGGPSGV CLAADEFERR IAFEDVPTAG AFMVFDRSRD 
MFEVARGFAH FFAHESCGFC TPCRVGTALL VKRMDKLAGG HGSRDDLDVL FELDRLLHST 
THCGLGASAC NPLRDTVLKF RPAYEQRLQS LDFEPGFDLD AELSIARRMT GRDDAAAHLE 
NRT