| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3779 |
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| Symbol | |
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| ID | 3962412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4222687 |
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| End bp | 4225449 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637918605 |
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| Product | periplasmic sensor signal transduction histidine kinase |
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| Protein accession | YP_525010 |
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| Protein GI | 89902539 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTCAC CTGTCGTCGT CGGCGGCGCC TCCTTTGCTT ACCTGCTGCT GCTCTTTGCG
GTGGCCTATC TGGGTGACTG GCGCGCTGCC CAGGGCCGCT CCATCATTGC CAACCCCTGG
ACCTATGCGT TGTCGATGGC GGTGTATTGC ACAGCGTGGA CCTACTTTGG CAGCGTCGGA
CGGGCGGCTT CCGGGGGCGT GTGGTTTTTG CCCATTTATC TCGGGCCCAC GCTCGGCATG
GTGTTGGGCT GGGTGGTGTT GCGCAAGATG ATCCGCATCG CGCACGCGTA TCGTCTTACG
TCGATTGCCG ACTTTATTGG CAGCCGTTAT GGCAAGAGTC CGCTGCTGGC CGGTTTGGTG
ACGCTGATCG CCGTGGTCGG CATCGTTCCC TATATTGCGT TGCAACTCAA GGCCGTGTCG
GCCGGCTATG CCCTGCTAAC AACGCCGCAA GGTGCCGATT TCGCCGCCCA GCCGCACTGG
GGTCAGGACA GCACTTTTTA CATGGCGCTG GCACTCGCCG GTTTCACCAT GGTATTTGGT
GCGCGTCATC TGGACTCGAC CGAGCGGCAC GAGGGCATGG TGGCGGCGAT TGCCTTTGAG
TCGGTCGTCA AGCTGGTGGC GTTTCTGGCC GTGGGCCTGT TCGTGGTGTA CGGCCTGTTT
GACGGGCTGA CGGACCTGTT TGCCCGGGTC CAGGCAGTGC CGGCGCTGGC CGGCCTGCTG
CGGCTGGAGC AGGGGGGCAG TTTCGCCTGG ACGCAATGGT TTGCGCTGAC GCTGTTGTCG
ATGCTGTCCC TGATGTTTTT GCCGCGCCAG TTTCAGGTGA TGGTGGTGGA GAATGTGCGC
GAGAGCCACT TGCGGCGCGC AGTTTGGGTC TTTCCACTGT ACATGTTGGC CATCAACCTG
TTTGTGCTGC CGATTGCGCT GGGTGGGCTG TTGTACTTCG GCCCCGGGCA AATGAATGCC
GAGACTTTTG TGCTCTCGTT GCCGCTGGCG GCGGGTCAGA ACGCGCTGGC GCTGTTTGCC
TTTATCGGCG GGTTGTCGGC GGCCACCGGC ATGGTGATTG TGGAGACGAT TGCTGTTTCC
ACCATGGTCT GCAACGAACT GGTGATGCCG CTGTTGCTGC GCACGCGCCA CTTCCGGCGC
GACGCCGGGC GCGATCTGAC CCGGATCCTG CTGGGCATTC GCCGACTCGC TATTCTGGGT
GTGTTGGTGC TGGGTTATGT GTACTTTCAT CTGGCCGGCG AAGCCTATGC GCTGGTCAGT
ATCGGACTCA TCAGCTTTGC GGCCGTCGCG CAGTTTGCGC CGTCCGTGCT GGGTGGTATG
TACTGGAAGG GTGGCACCCG ACGCGGCGCG GTGGCGGGTT TGCTGGCCGG TTTCTTGATG
TGGGCGTACA CGCTGATGCT GCCGTCGATT GCCAAGTCGG GGTGGCTGGG GGATGAATTT
CTGTACAAGG GACTGGGCGG CCTGGCCTTG CTGCTCCCTG AACGACTCAT GGGCATGCAG
GGCCTGGATA ACCTGACGCA CTCGTTGTTC TGGAGTTTGT TGGTCAACGT GGCTGCCTAT
GTGGGTCTGT CGCTTTGGCG CGCGCCGTCC GGCCCCGAGG CTAGCCAGGC GCTGCTGTTT
GTGGACGTGT TCCGGCGCAC CGCCTCGTCA AGTCCGGTGT TTTGGCGCGG TCAGGCCAGG
GTGCCCGATC TGTTGCGTCT GTGTGAGCGT TTTATGGGGG TCCAGAAAGC GCGCGCACTG
TTCAGGTCTT ACGCTGGCCC GGTGGAGGCG CGCCAGATGG ACACCATCCG GGCCGATGCC
CGGTTGGTGC AGTTTGTCGA AACCCAGTTG GCGGGCGCCG TGGGGAGCGC GTCGGCGCGG
GTCTTGGTGG CCTCCGTGGT GGAAGAAGAA CCGCTCACAC CGGAGGACGT GTTGCGCATT
CTGGACGAAG CGTCGCAGTT GCGGGCGCAT TCACGTGAAC TGGAAGAAAA ATCCGATTCA
TTGGAGCGCG CCACCGCCGA ACTGCGCCAG GCCAATGAAC AGCTTAAGAG CCTGGACCGG
CTCAAGGACG ACTTCATGTC CTCGGTCACG CACGAGTTGC GCACGCCTCT GACGTCAATC
CGGGCATTGG CCGAATTGCT GCGCGATGAT CCCAGAATTG CCCTGGCGCA GCGGCGCCAG
TTTATCGAGA TCATTGTCAG CGAGACCGAG CGCCTGTCGC GCCTGGTCAA TCAGGTGCTC
GACATGGCCA AGATTGAATC CGGTCATGCC GAGTGGCACA CCGCCGAGGT CGACATGCGT
GCGCTGGTGA GCCAGGCCGT GAGCACCACG GCCGAATTGT TTCGCGAACG TCAGATTGCA
GTTGAGGTGG CGCTGCCGGA GCAGGTGCCG ACGCTGATGG CGGACCCGGA TCGCCTGATG
CAGGTCATGC TCAATCTGCT GTCCAATGCC GCCAAGTTTG TGCCGTTGCC GGGCGGTCGG
GTTCGTGTAA GCCTGAGCAG TGACGATAGC GGGGTGACAG TGGCAGTCAG CGACAACGGC
CCTGGGGTAG CAGCCGAGCA GCAGGCGTTG ATTTTTGACC GGTTCCGCCA AGGTGGCGAT
GCCGCCAACC GGCCCCAGGG CACTGGACTG GGCTTGCCAA TCAGTCGTCA GATTGTGGAA
CACTTCGGTG GGCGGTTGTG GCTTGAGTCT GGATTGCAGC AGGGCGCCCG CTTTCTGTTT
CACCTGCCGA GAAATAATAC AAGTTGCGCA CCAGACGCAA GTGCAACAGG AGACACAGCA
TGA
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| Protein sequence | MLSPVVVGGA SFAYLLLLFA VAYLGDWRAA QGRSIIANPW TYALSMAVYC TAWTYFGSVG
RAASGGVWFL PIYLGPTLGM VLGWVVLRKM IRIAHAYRLT SIADFIGSRY GKSPLLAGLV
TLIAVVGIVP YIALQLKAVS AGYALLTTPQ GADFAAQPHW GQDSTFYMAL ALAGFTMVFG
ARHLDSTERH EGMVAAIAFE SVVKLVAFLA VGLFVVYGLF DGLTDLFARV QAVPALAGLL
RLEQGGSFAW TQWFALTLLS MLSLMFLPRQ FQVMVVENVR ESHLRRAVWV FPLYMLAINL
FVLPIALGGL LYFGPGQMNA ETFVLSLPLA AGQNALALFA FIGGLSAATG MVIVETIAVS
TMVCNELVMP LLLRTRHFRR DAGRDLTRIL LGIRRLAILG VLVLGYVYFH LAGEAYALVS
IGLISFAAVA QFAPSVLGGM YWKGGTRRGA VAGLLAGFLM WAYTLMLPSI AKSGWLGDEF
LYKGLGGLAL LLPERLMGMQ GLDNLTHSLF WSLLVNVAAY VGLSLWRAPS GPEASQALLF
VDVFRRTASS SPVFWRGQAR VPDLLRLCER FMGVQKARAL FRSYAGPVEA RQMDTIRADA
RLVQFVETQL AGAVGSASAR VLVASVVEEE PLTPEDVLRI LDEASQLRAH SRELEEKSDS
LERATAELRQ ANEQLKSLDR LKDDFMSSVT HELRTPLTSI RALAELLRDD PRIALAQRRQ
FIEIIVSETE RLSRLVNQVL DMAKIESGHA EWHTAEVDMR ALVSQAVSTT AELFRERQIA
VEVALPEQVP TLMADPDRLM QVMLNLLSNA AKFVPLPGGR VRVSLSSDDS GVTVAVSDNG
PGVAAEQQAL IFDRFRQGGD AANRPQGTGL GLPISRQIVE HFGGRLWLES GLQQGARFLF
HLPRNNTSCA PDASATGDTA
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