| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3775 |
|---|
| Symbol | |
|---|
| ID | 3962408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4217231 |
|---|
| End bp | 4218925 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637918601 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_525006 |
|---|
| Protein GI | 89902535 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAA TCTGGTTAAA GAATTACCCG CCCGGGATAG CGGCTGAGGT GGATGTGCAT
GAGTTCGCCT CGCTGCGGGA TGTGCTGCGG CGCAGTTGCG AGCGCTTTGC CGAACTGCCG
GCATACAGCA ACATGGGTGC GTCAATGACC TATGCCGAAC TCGATCAGCA CAGCCGCGAC
TTTGCCGCCT ACCTGCAAAA CACGCTGGGT CTCAACAAGG GGGAGCGGGT CGCGGTCATG
ATGCCCAACC TGTTGCAGTA TCCGGTGGCA CTGTTTGGCG TGCTGCGCGC CGGGCTGGTG
GTGGTGAACG TGAACCCGCA GTACACCGTG CCCGAACTGG AGCACCAGCT CAAGGATTCC
GGCGCGGTCG CCATCGTGGT GCTGGAAAAC TTTGCCCATA CCTTGCAGGA AGTGCTGAAC
AGGAACCCGG CGCTGAAGCT CAACGTCCTG AGCACCGAAG TTGGCGACAT GTTCCCGGTC
CTCAAGGAAG TGCTCACCAA CGTGGTGGTC AAGTATGTGA AAAAAATGGT GCCCGAGTGG
CATATTGACG GTGTCATCGA ATTCAATGCC GCCCTGCGCG CGGGCCGTGA CTTGACCCTG
CGCCATGTGC CCCTGGGCCA TGACGACATC GCTTTTCTAC AGTACACCGG CGGCACCACC
GGCGTCGCCA AGGGCGCTGT GTTGACACAC GGCAACCTGA CGGCGAACCT GCAGCAGCTG
GGCGCATGGA TTGCGCATGA CCTGCTCGAC GGTCGGGAGC TGTTCGTCTG TCCGTTGCCG
CTGTACCACG TCTTCGCCCT GAGTTCGAGC CTGGTGTTCA TGAAGATCGG CGCGCACAGC
ATCCTGATCA CCAACCCGCG GGACCTGCCC GCGTTCATCC ATGATCTCAA GAAATACCCT
TTCACGGCCA TCGTCGGCGT GAATACGCTG TACCGGGCGC TGCTCGATAC GCCTGAATTT
GCCGAGGTGG ACACCCGCAG CCTCAAGGTT GTCATTGCCG GCGGCATGGC GGTGCAACGT
GTGGTGGCCG AACGCTGGAA GAAGGCCACG GGCAAGCCCA TCATTGAAGC CTACGGTCTG
ACAGAAACCT CGCCCGGCGT GACGGCCAAT CCGCTCAACA TCGTCGACTG GACGGGCACC
ATCGGCATGC CATTTCCGTC GACCGAGGCC GCCGTGCTGG ACGACGACGG ACGCGAGTTG
GCGCTCGGCG AGGTGGGCGA AATCGGCATC CGCGGCCCGC AGGTGATGAC GGGCTACTGG
AACCGCCCTG ACGAGACCGC CAAGGTGTTC ACCGCGGAGG GCTGGCTGCG CACCGGCGAC
ATGGGCTTCA TGGACGAGCG CGGCTACTTC AAGATCACCG ACCGAAAGAA GGACATGATC
ATCGTGTCCG GCTTCAAGGT GTTTCCGAAC CAGATTGAGG ACGCCGTGGC GCTGCATCCG
GGCGTGGCCG AGGTGGCAGC CATTGGCGCG CCCGACGAGA GATCCGGCGA GGTGGTCAAG
ATCATTGTGG TCAGGAGCGA TCCGGCCCTG ACCGAGCAAG ACCTGCTGGC CCATTGCCGC
CAGCACCTGA CCGACTACAA GGTGCCCAAG ATCATCGAGT TCCGCACCGA GCCGCTGCCC
AAGACCAACC TGGGCAAGAT TTTGCGGCGG CAGTTGCGCG CACTGCCTGA GTTGCCAGTG
CCGACGCCCC CCTGA
|
|---|
| Protein sequence | MDKIWLKNYP PGIAAEVDVH EFASLRDVLR RSCERFAELP AYSNMGASMT YAELDQHSRD
FAAYLQNTLG LNKGERVAVM MPNLLQYPVA LFGVLRAGLV VVNVNPQYTV PELEHQLKDS
GAVAIVVLEN FAHTLQEVLN RNPALKLNVL STEVGDMFPV LKEVLTNVVV KYVKKMVPEW
HIDGVIEFNA ALRAGRDLTL RHVPLGHDDI AFLQYTGGTT GVAKGAVLTH GNLTANLQQL
GAWIAHDLLD GRELFVCPLP LYHVFALSSS LVFMKIGAHS ILITNPRDLP AFIHDLKKYP
FTAIVGVNTL YRALLDTPEF AEVDTRSLKV VIAGGMAVQR VVAERWKKAT GKPIIEAYGL
TETSPGVTAN PLNIVDWTGT IGMPFPSTEA AVLDDDGREL ALGEVGEIGI RGPQVMTGYW
NRPDETAKVF TAEGWLRTGD MGFMDERGYF KITDRKKDMI IVSGFKVFPN QIEDAVALHP
GVAEVAAIGA PDERSGEVVK IIVVRSDPAL TEQDLLAHCR QHLTDYKVPK IIEFRTEPLP
KTNLGKILRR QLRALPELPV PTPP
|
|---|
| |