| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3770 |
|---|
| Symbol | |
|---|
| ID | 3962403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4208672 |
|---|
| End bp | 4210831 |
|---|
| Gene Length | 2160 bp |
|---|
| Protein Length | 719 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637918596 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_525001 |
|---|
| Protein GI | 89902530 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAATT TGGAGGGCGC CGGCAGCTTG TCGCCTACAG TGACTGCCAG CGATGAGTTG
CTGGATTGTT TACTGATCGT CGCGCGAGCT CACGGTGAAG TACCTACTCG TGACGCGCTC
ATGGCGGGTC TGCCAGCCGA GCATTCCCGC CTGACCCCTG GACTGTTCTC GCGTGCCGCC
CGTCGTGCAC ACCTCAGCAG CCAGTTGGTG TCCTGCCCAT TGACCGGTCT CAAAGCGGTC
CTTTTACCAG CCATTGCGCT GCTGCAAGGG GAACGCGCTT GCGTGGTACT GGGTTTTAAT
GAAGATCGCA GTCGGGCCAA CGTGGTCTAC CCCGAACTGG GCGATGCCCC GGTCCAGGTG
CCTCTGTCTA CATTAGAGGC CGACTACCTG GGTACTTCAA TCTATGCGCG GCCGACCCAA
CGTTTTGACG CGCGCACGCC CGAAGTGCGC GCTGGTCGGC ATGGGCACTG GTTCTGGGGC
GTGATTGGCG AAAGCCGTCC GCTTTACCGC GACGTGCTGC TGGCCGCCCT GCTGGCCAAT
CTGTTTGCCC TGGGCATGCC CCTGTTCACG ATGAATGTGT ATGACCGCGT GGTGCCCAAC
CACGCGTTTG AAACCCTGTG GGTGCTGGCG CTGGGCCTGC TGCTCATGCT GATCAGCGAC
CTGGTGTTGC GCACCATGCG CGGTCGTTTT GTTGACCTGG CCAGCAGCCG GGCCGACGTC
AAGTTGTCGG CCTTCATCAT GGAGCGCGTG CTGGGCATGC GCATGGAGCA ACGTCCGGCC
TCGGCGGGGT CGTTTGCTTC CAATCTGCGC GCCTTCGAGT CGGTGCGTGA CTTTATTGGC
TCGGCGACGG TCGTGGCCTT TATCGACCTG CCGTTCGCAC TGATCTTCAT GGTCGTCATC
GGCTTGATCT CCTGGCTCAT GCTCATTCCC CTTTGCATCG GTGCGGCCAT CATGGTGCTT
TATGCACTGG CCGTGCAGGG CCGCATGCAC GAACTGGCCG AAACCACTTA CCGCGCAGGC
GCCCAGCGCA ACGCCACCCT GATAGAGGGC CTGGTCGGGT TTGAAACCCT CAAGGCGCTT
GCGGCCGAGG CGCCCATTCA GCGCAAATGG GAAAAAAGCG CCGCCCTGCT GGCCCGCGTG
GGCGCGCAGC TGCGCTTGCT CTCCAGTACC GCCAGCAACA CCTCGGCTTT TGTGCAGCAG
TTCATCAATC TGGCCATCGT CATCATTGGT GTGTACCTGA TATCAGAACG TGATCTCACC
ATGGGCGGCC TGATTGCCTG CACCATGCTG GCATCCCGCG CGATGGCGCC GGTGGGACAG
GTGGCCGGCT TGCTGGTGCA GTACCACACC GCCGCCACCG CGCTGACCTC GCTGAACGAA
ATGATGGCGC GCGAAGTCGA GCGCCCCGAG GGCACCTCCT TCATCAGCCG TGGACGACTG
AAAGGCGCTC TCGAATTTCG CGATGTCAGC TTCACCTACC CCGGCCAAAG CACGCCGTCG
TTGCGTAACC TGACGTTCAG CATCAAACCC GGTGAAAAAG TGGCGATTTT GGGGCGCATC
GGCTCGGGCA AGACCACGCT TGAAAAGCTC ATCCTCGGTT TGTACCTTCC GTCCGAAGGC
GCCGTACTGG TTGACGGTAT TGATTTGCGC CAACTCGACC CCGCCGAACT CCGGCGCCAA
ATTGGCTATG TCCAGCAAGA CGTCATGTTG TTCTACGGTA GCCTGCGTGA GAACATCACT
CTGGGTGCCC CACTGGCAGA CGACGCCGCC ATCATCAAGG CGGCTGAAAT CGGCGGCATT
ATCGGCCTTG TGAATCAGCA CCCCAAAGGC TTTGACATGC TGGTTGGTGA GCGGGGCGAG
TCTTTGTCGG GCGGGCAACG CCAGGGCGTT GCCATCGCGC GGGCGGTCAT CAACGACCCG
CCCATCATGC TGCTGGACGA GCCCACCTCG TCCATGGATT ACTCCAGCGA AGATGACATC
AAGCGCCGGC TAACCGAGTA TGCGCAAGGA AAAACCGTGG TGCTGATCAG CCACCGCACC
TCGCTGCTGG ACCTGGCAGA CCGCATCATC GTCATGGATG GTGGCCGCAT CATGGCCGAC
GGTCCCAAAG AGCAGGTGGT TACTGCGCTG CGCCAAGGGC GCATCGGAAA GGCTACCTGA
|
|---|
| Protein sequence | MWNLEGAGSL SPTVTASDEL LDCLLIVARA HGEVPTRDAL MAGLPAEHSR LTPGLFSRAA
RRAHLSSQLV SCPLTGLKAV LLPAIALLQG ERACVVLGFN EDRSRANVVY PELGDAPVQV
PLSTLEADYL GTSIYARPTQ RFDARTPEVR AGRHGHWFWG VIGESRPLYR DVLLAALLAN
LFALGMPLFT MNVYDRVVPN HAFETLWVLA LGLLLMLISD LVLRTMRGRF VDLASSRADV
KLSAFIMERV LGMRMEQRPA SAGSFASNLR AFESVRDFIG SATVVAFIDL PFALIFMVVI
GLISWLMLIP LCIGAAIMVL YALAVQGRMH ELAETTYRAG AQRNATLIEG LVGFETLKAL
AAEAPIQRKW EKSAALLARV GAQLRLLSST ASNTSAFVQQ FINLAIVIIG VYLISERDLT
MGGLIACTML ASRAMAPVGQ VAGLLVQYHT AATALTSLNE MMAREVERPE GTSFISRGRL
KGALEFRDVS FTYPGQSTPS LRNLTFSIKP GEKVAILGRI GSGKTTLEKL ILGLYLPSEG
AVLVDGIDLR QLDPAELRRQ IGYVQQDVML FYGSLRENIT LGAPLADDAA IIKAAEIGGI
IGLVNQHPKG FDMLVGERGE SLSGGQRQGV AIARAVINDP PIMLLDEPTS SMDYSSEDDI
KRRLTEYAQG KTVVLISHRT SLLDLADRII VMDGGRIMAD GPKEQVVTAL RQGRIGKAT
|
|---|
| |