| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3752 |
|---|
| Symbol | |
|---|
| ID | 3961101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4183652 |
|---|
| End bp | 4185325 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637918578 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_524983 |
|---|
| Protein GI | 89902512 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.419437 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC GTATTTGGCT TAGCAGCTAC CCCGATGGCG TTCCCGCTGA TATTGATCCG
GGCAAGTACT CGTCGATTGT GAAGATGATG GAGGAGAGCT TCAAGAAGTA CGCCGACCGG
ACCGCCTACA GTTTCATGGG CAAGACGCAG AGTTACAAAC AGGTCGATAG CCTGAGTCTT
GCGTTTGGGG TTTACCTGCA AGGTTTGGGG CTGGTCAAAG GCGACCGGGT TGCAGTGATG
ATGCCCAATG TGCTGCAGTA TCCGGTGGCG GTGGCCGGCA TTTTTCGTGC CGGCTATATC
CTAGTGAATG TCAATCCGCT GTACACCGCG CGTGAGCTGG AGCACCAACT CAAGGATTCG
GGCGCCAAGG CCATTGTCAT TCTGGAAAAT TTTGCTTCGG TTCTGGAAAA ATGTGTTGCT
GCGACGCCGG TCAAGCACGT GGTGTTGTGC GCGATGGGTG ACCAGTTGGG CCTCCTCAAA
GGCGCACTGG TCAATTATGT CGTGCGCAAC AAGAAAAAAC TGGTGCCCGC GTTCTCGCTG
CCAGGCGCCG TGCGCTTCAA TGCCGCCGTT GCCAAGGGCA GTGCGGGGAC GCTCAAAAAA
ATAACGCTCA AGCCCGACGA TGTGGCGGTG CTGCAATACA CCGGCGGTAC TACCGGCGTC
TCCAAGGGCG CGGTGCTGCT CCATCGCAAC CTGGTGGCCA ACTTGTTGCA GGTGGAGGCC
TGGAATGAAC CGGCGCTGAA GAAGATTCCG GCCAACGAGC AGTTGACGTC GGTCTGCGCC
TTGCCGCTGT ACCACATCTT TGCCTTCACG GTGGGCATGA TGCTGTCGAT GCGCCTGGGC
GGCAAGCTGA TTCTGATTCC GAATCCGCGC GACCTGGTGG CCACGCTGGC TGAATTGGCC
AAACACAAAA TCCATGTGTT TCCGGCGGTC AACACCTTGT TCAATGGCCT GGCCAATCAT
CCCGATTTCA ACAAGGTGGA CTGGCGTGGT CTGGTGGTGT CCGCAGGCGG CGGCACGGCG
GTCCAAAGTG CGGTGGCCAA GCTCTGGTTC GAGAAAACCG GCTGCGCCAT TGCCGAGGGC
TACGGTCTGA GCGAGACCTC GCCGGTGGCC ACGTCGAACC CGGTCACCGT CACCGAGTAC
TCGGGCACGA TTGGTGTTCC GATTTCAAGC ACTTATCTGA GACTGCTCGA TGACGATGGC
AAGGAAGTGC CGATCGGTCA ATCCGGCGAG ATTGCCATCA AGGGCCCCCA GGTGATGGCC
GGCTATTGGC AGCGCCCGGA TGAGACCGCC AACGTCATGA CTGCCGATGG GTATTTCAAG
TCCGGCGACA TCGGCGTGAT GGATGAGCGC GGTTACTTCA AAATTGTGGA CCGCAAGAAG
GACATGATTC TGGTCAGCGG CTTCAACGTC TTCCCCACCG AGTTGGAGGA CGTGGTGTCC
CAACTCAAGG GGGTTATGGA GTGTGCTTGC GTCGGTGTGC CGGACGCCAA GTCCGGTGAG
GCTGTCAAGC TGGTGATTGT CAAGAAAGAC CCGAGCTTGA CCGAAGCGCA GGTGCGGGCC
TACTGCAAAG AAAATCTAAC CGGCTACAAG CAACCCAAGG TGATTGAGTT CCGCGCCGAA
TTGCCAAAAA CTCCGGTCGG CAAGATTTTG CGGCGAGAGT TGAGAGATAA GTAA
|
|---|
| Protein sequence | MTDRIWLSSY PDGVPADIDP GKYSSIVKMM EESFKKYADR TAYSFMGKTQ SYKQVDSLSL
AFGVYLQGLG LVKGDRVAVM MPNVLQYPVA VAGIFRAGYI LVNVNPLYTA RELEHQLKDS
GAKAIVILEN FASVLEKCVA ATPVKHVVLC AMGDQLGLLK GALVNYVVRN KKKLVPAFSL
PGAVRFNAAV AKGSAGTLKK ITLKPDDVAV LQYTGGTTGV SKGAVLLHRN LVANLLQVEA
WNEPALKKIP ANEQLTSVCA LPLYHIFAFT VGMMLSMRLG GKLILIPNPR DLVATLAELA
KHKIHVFPAV NTLFNGLANH PDFNKVDWRG LVVSAGGGTA VQSAVAKLWF EKTGCAIAEG
YGLSETSPVA TSNPVTVTEY SGTIGVPISS TYLRLLDDDG KEVPIGQSGE IAIKGPQVMA
GYWQRPDETA NVMTADGYFK SGDIGVMDER GYFKIVDRKK DMILVSGFNV FPTELEDVVS
QLKGVMECAC VGVPDAKSGE AVKLVIVKKD PSLTEAQVRA YCKENLTGYK QPKVIEFRAE
LPKTPVGKIL RRELRDK
|
|---|
| |