| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3725 |
|---|
| Symbol | |
|---|
| ID | 3963259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4156271 |
|---|
| End bp | 4157716 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637918551 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_524956 |
|---|
| Protein GI | 89902485 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGTCA AAGCCGCGTC GCAGTCGCTG GCCGACCAAC TGGCTGAGCG TTTTGCCGAG
CGCATTCGCA CCGGCTTGCT GGCGCCGGGC ACGCGTTTGC CGTCGGTGCG CCAGTGCGCG
CAGCAGCAGG GCGTGAGCCC GTCGACCGTG GTCGCGGCCT ACGACCAGTT GCTGGCGCAG
GGGCTGGTTG AAGCGCTAAA AAATCGCGGG TTTTATATAA GAAATAGGGC TGTAGCCCCC
GTCAATAGTT CGCATAATGC TATTAATTTG ATGGTATTCG ACGACGCGCC AGCAAGGGTC
AAGACCACGC TGGAAGCCCA GCACGTGCCG GTGAATGCCA CCGCCCTGAT CCGCGGCATG
TTTCACGGCG GCAGCGAGCA GCCGCAACCC GGCATGGGGG CGTTTCCGCC GGACTGGCTG
CAAACCACTT TCATGGCCGC TGCCGTGCGC CGCGTCACCA GCGGCAAGCA GTTGCAGGCG
TTCTCGCTGC AATATGGCGA GCCCGCTGGC GATGGCGGCT TGCGCCAGTC GCTCTCCACC
AAGCTCAACG CCCTGGCCAT TCACGCCGCG CCGCAGCAGA TCATCACCAC CGTGGGGGCC
ACCCACGCAT TGGACCTTGT GAGTCGCACG CTGCTGCGCG CCGGTGATTA CGTGATGGTT
GAAGAGCCTG GCTGGGCGAT TGAATTCGCC CGGCTGGATG CCCTGGGCAT GCACATCCTG
CCGGTGCCGC GCGGCCCGGA CGGGCCGGAC CTGGCGGTGA TGGCGCGTTA TTGCGAGCTG
CACAGCCCGA AGCTGTTTGT GAGTGTCAGC GTGTTCCACA ACCCAACCGG CTACTGCCTG
ACGCCGGGCA GCGCCCACCG CGTGCTGCAA CTGGCCAATC AGCACAACTT TTATATTGCT
GAAGACGACA CCTACAGCCA CATCGCGCCC GAGCACGCCA CGCGCCTGTG CGCGCTGGAC
GGTTTGCAAC GCACCATTTA TGTCAGCGGC TTTGCCAAAA TTCTGGCGCC CGGCTGGCGG
GTGGGCTTCA TGGCGGCACC CACCGCGCTG GTGGAGCGGC TGCTTGACAC CAAGTTGCTG
GCCACACTGA CCACCCCTGC GCTGCTCGAA AAAGCCCTGG CCTGGTGTAT TGACCAGGGC
CAGTTACGCC GCCATGCCGA GCGCATTCGC ACGCGACTCA ATCAGGCCCG GGGGCGAAGC
GCCCGGCTGG CGCTGGCGGC GGGCTGCACC TTTGCCGCGC CACCGGCCGG GCTTTTTGGC
TGGGTCGATA CGGGTGTGGA CACCGAGCTG CTTTCGCAGC GCATGCTGGA CGCGGGTTAT
CTGCTGGCAC CAGGTGCCTT GTTTCATGCC AGTCGCGCGC CCAGTACGCT GATGCGCATC
AACTTTTGCA CCACGCAGGA TGCCCAGTTC TGGCAGGTGT TTCAGACCGT CAGGGCGGGG
ATGTAG
|
|---|
| Protein sequence | MLVKAASQSL ADQLAERFAE RIRTGLLAPG TRLPSVRQCA QQQGVSPSTV VAAYDQLLAQ
GLVEALKNRG FYIRNRAVAP VNSSHNAINL MVFDDAPARV KTTLEAQHVP VNATALIRGM
FHGGSEQPQP GMGAFPPDWL QTTFMAAAVR RVTSGKQLQA FSLQYGEPAG DGGLRQSLST
KLNALAIHAA PQQIITTVGA THALDLVSRT LLRAGDYVMV EEPGWAIEFA RLDALGMHIL
PVPRGPDGPD LAVMARYCEL HSPKLFVSVS VFHNPTGYCL TPGSAHRVLQ LANQHNFYIA
EDDTYSHIAP EHATRLCALD GLQRTIYVSG FAKILAPGWR VGFMAAPTAL VERLLDTKLL
ATLTTPALLE KALAWCIDQG QLRRHAERIR TRLNQARGRS ARLALAAGCT FAAPPAGLFG
WVDTGVDTEL LSQRMLDAGY LLAPGALFHA SRAPSTLMRI NFCTTQDAQF WQVFQTVRAG
M
|
|---|
| |