Gene Rfer_3654 details

Gene Information

• Locus tag: Rfer_3654
• ID: 3963982
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 4071832
• End bp: 4073790
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637918472
• Product: diguanylate cyclase with PAS/PAC sensor
• Protein accession: YP_524887
• Protein GI: 89902416
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG2202] FOG: PAS/PAC domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTGGCAA GGGAGGAAAA AATCAAAAAT ACCGATGAGC CACTGGCACG TCTTGACGGC 
GGTGCGGACC CGCTGATTGC CGGGGCGCCG TCGCTGACGC TGGCGAGGTA TGCAGTCGCG 
GCGGTGCTGA TCGGCGCGGT GGCTTCCATG ATGGCGCTGG GTGTCCTGCT GCCAGAGGCG 
AGTGTGCGTA CGGTCGGGCC GCTACTGCTG TTCCTGATTG CGGCCCTGGC TTGGTATCCT 
CTCTCTCGCG GCAAGATTAA AACCGCTGTC TGTGTGCTGA CCTTCGGCGT CTGGGCCGTG 
ATGACAGGAA TCGCTGTCTT TGCCGGGGGT GTGCGGGCAC CCGTGGTCAT CATCTATCCC 
GTGCTCATTT TGATGTCGGG TTGGCTGCTC AACGCACGCG TAGCGATGCT GCTGACCGCC 
ATGACCGTGC TGACAACTGT TGGTTTATTC CTGGCCGAAT CCTGGGGTTT TCTGCCACCG 
CCGCTGGCCT CACCCGTTGT GATTTACTTC GGTGATCAAA TTTTGATGTA TCTCCTGTCG 
GCGGCGCTGG TGGTTTTTGT CTTGCGCGCC TACCAAAATC GCTTGCGCGA ACTGCGCCAA 
GCCAGCAGCG ATCTTGAGCA TCGCACGCTT GCCCTGCAGG AGAGAAAAGC GGAACTGCAC 
CGCGCGCAAG CGGTCGCCAA GGTAGGAAGC TGGGTTTATG ACATCGCGCA GGAAACAATG 
AGTCTGTCGG CCGAGGCCTG CCGCATCTTC GGGCTGGCCG AGGGCAGCAG CGTCAGTCTG 
GCCACCTACC TGTCGCAGGT TCATCCGGCT GACCGGAACG AGCTGGAGCA CGCCTGGCAA 
CGCGCATTGC AAGGTGATGC CATTGACCAC ACACACCGCA TCCTGGTCGG CAAAACGGTG 
CGCTGGGTTC GCCAAAAGGC CGAATCAGGA TTTGCCCCCG ATGGGCTGAA GCGACGCGCC 
GTGGGCATTA CGCAAGACAT CACCGAGCTT AAAGAGGCGC AGGCGGCGCT GCAGGAAAGC 
GAGGAGCGCT ACCGCACCAT GATCGAATGG ACGCCCGAAT CGATCCTGGT GCACCGGATG 
GGAAAAATTC TTTATGCCAA CCCGGCCGCG ATCAAGCTGT TTGGCGCACC GGATGCCGCC 
AGCTTGTTGC GCAAATCAAC GTCCGAGCTG ATTCACCCGG ACGATTTGAA ATCGCAGACC 
GAGCGCATGA AGAGCATCAG TAACCATGTG CCCATCACAC CCATGGTGGC GGCCCGGTTT 
CTCAAGCTCG ATGGCCGTGT GATTGATGTT GAGGTGCAGG GCACCGCCAT CATCTACGAC 
GGCGAGCCCG CGATTCACGT TTGTATCCGC GACATCAGCA CGCGCAAGCA GATGGAGGAT 
CAAATTCGTC AATTGGCTTT TTTTGACCAC CTGACCCTGC TGCCCAACCG GCGTCTGCTC 
ACCGACCGTT TGAGCCAGGC GGTGGCCGCC AGCAAGCGCA GCAGCTGCTT TGCGGCCTTG 
CTGTTTCTGG ATCTGGATAA CTTCAAGCCG CTCAATGACC AGCATGGGCA TGCGGTGGGT 
GATTTGCTCT TGATGGAGGC GGCCGCACGG CTGATGAATT GCGTGCGGGG GGTGGATACG 
GTGGCGCGCT TTGGCGGTGA CGAATTTGTG GTGCTGCTCA CTGAACTGGA TGCGAGGCAC 
GCTGAGTCAA CGGAGCAGGC CGCGATCGTG GCGGAAAAAA TCCGTACCAG CCTCTCAATA 
CCCTATCAAT TGACAGTCAA GACCAAAGAG CAAGTTGCCA CACGAATCGA ACACCACTGC 
ACCATCAGTG TGGGCGCGGT GGTTTTCCGG GGGCCAGAGA GCGACCCGGA CGACGTGCTC 
AAGTGGGCCG ATACCGCCAT GTACCAGGCC AAGCAGGCAG GCCGAAACTC GATCCGGTTT 
TATGCCAGTA CCGAACAAGC GACTGGCCAC CGGTCTTAG 

 

Protein sequence

MLAREEKIKN TDEPLARLDG GADPLIAGAP SLTLARYAVA AVLIGAVASM MALGVLLPEA 
SVRTVGPLLL FLIAALAWYP LSRGKIKTAV CVLTFGVWAV MTGIAVFAGG VRAPVVIIYP 
VLILMSGWLL NARVAMLLTA MTVLTTVGLF LAESWGFLPP PLASPVVIYF GDQILMYLLS 
AALVVFVLRA YQNRLRELRQ ASSDLEHRTL ALQERKAELH RAQAVAKVGS WVYDIAQETM 
SLSAEACRIF GLAEGSSVSL ATYLSQVHPA DRNELEHAWQ RALQGDAIDH THRILVGKTV 
RWVRQKAESG FAPDGLKRRA VGITQDITEL KEAQAALQES EERYRTMIEW TPESILVHRM 
GKILYANPAA IKLFGAPDAA SLLRKSTSEL IHPDDLKSQT ERMKSISNHV PITPMVAARF 
LKLDGRVIDV EVQGTAIIYD GEPAIHVCIR DISTRKQMED QIRQLAFFDH LTLLPNRRLL 
TDRLSQAVAA SKRSSCFAAL LFLDLDNFKP LNDQHGHAVG DLLLMEAAAR LMNCVRGVDT 
VARFGGDEFV VLLTELDARH AESTEQAAIV AEKIRTSLSI PYQLTVKTKE QVATRIEHHC 
TISVGAVVFR GPESDPDDVL KWADTAMYQA KQAGRNSIRF YASTEQATGH RS