| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3626 |
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| Symbol | |
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| ID | 3962719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 4042789 |
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| End bp | 4045311 |
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| Gene Length | 2523 bp |
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| Protein Length | 840 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637918445 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_524860 |
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| Protein GI | 89902389 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2703] Hemerythrin |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR02481] hemerythrin-like metal-binding domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCCTCC AGCGCTTTCA GCCGCAGTCG CTCAAAACCC GCGTCACCCT GCTGACGCTG
CTCATCGTGG TGCTCAGCTT CTTGTCGCTG GCCTCCTACA TGAAAGGGCT GCTGCGCGAA
GAACTGCTGC GTTTTACCGG CGAACAACAG CGTTCAGCCC TGAACTTGCT GACCGCTGAA
GTCAATCACG GCTTGCAAGA CCGGCTGGAC ATCCTGAAAA CAGTCGCCTC AAGGGTCAGT
CCGACGCAGG TGGACGACCA GGCCGCGATG AACGCTTTCC TGCTTGAACG GCCATTTCTG
GCCGGGCTGT TCAATAGCGG CGCCATGATC TGGAACCGGC AAGGGGTGTT GCAGGCGAAC
ATGCAATTCT TGAAAGACGG GCTTGTCGCC AACGCGCTTG ATCCGCAAGA GTTGGCCACG
GTTCTCAAGG ACGGCGAAGC TGTCATTGGC CGCATTCACT TTCACAGCAA GCCAAACGCG
CCTGCGTTTG CCATGGCCGT GCCGATTCGC AACCTCCAGG GCGAGGTCAT CGGCGCATTG
GCAGGTGTTA TTCGGCTGGA TCAAGCCAAC TTTTTGAGCC AATTGGCCTC GCACCGTTAT
GGCAAGACCG GCAACTTCTT TCTGCTGGAC GCGCGCCAAA GGCTGATTTT TGCCACGTCC
GACACACCGC GCTTGATGGA AGTCCTGCCC GCCCCTGGCA TTAGCCCCTG GATTGACCGT
TTTGTGCAGG GTTTTGAGGG TACGGCACGG GTGGTCAACC CGCATGGCGT TGAGGTGCTG
GTCAGCATCC GGCAGATTCC CCTGGCCCAC TGGTACGCCT CCGTCACACT CGCGCCCGAG
GAAACCTTTG CCCTGATTGA GGCGATCCAG CCACGCGGCC GGCTGGCCGC ACTGGTGCTG
GCCCTTTTTT GCTTGACCCT CATCTGGCTG ATGCTGCGAC GCCAGCTCGC CCCCATGACG
GCGGCAGTCA ACACATTGGA CGGCTTTGTG CGCCACAACC AGCCGCCACA AGCACTGCCC
GTGGTTCGGC AAGACGAAAT CGGCCAATTG GTGGGTGGCT TTAACCGGCT GCTCGACACC
TTGGCGCAAC AGAAAAAAGT GCTGCAGGAC AGTGAGATCT TCAAACAAGC GGTGCTCAAT
TCAGTGACCG CCGAAATTGC CGTGCTCAAT CGCAACGGCG TCATTTTGAC GGTTAACGAT
GCCTGGCGGC GTTGTTCGCA AGCGTGTGCA GCCGAGCTCG GGCAGAGCGC AAGCAGCACC
GAGGTGGGTG CCAATTACCT CGCAGCCTGT CAAAGCGTCG AGGCTGATCC CGCCGCAAGC
GGCACACTGT CGGCGCAAGA CGGCATTCAG GCCGTGCTGG ACGGTCGCTC GCCGCGTTTC
TACCTCGAAT ATACGTGCCA TTCTTCACAG CAACAGCGCT GGTTCAGCAT GAGCGTGACC
CCACTGCAAG GCGAGGCGCT GCAAGGTGCG GTGGTGTCAC TTGAAGATAT TTCCGAACGC
ATCCAGATGG AAAAGCAGGT GCGTGATCTG GCTTTTTATG ACCCCCTCAC CCATTTGCCC
AACCGGCGCC TGGCGCTGGA ACGACTGACG CAACAGCTGG TGCGCGCACG TCGGGCCCAA
ACTCGCCTGG CGCTGTTGTT TATCGACCTG GACAAGTTCA AGCCGATCAA CGACGCGCTC
GGGCACGAGG TCGGAGACTG GGTACTGCAT GCCGTGGCAC AGCGCATTCA GGCGTGCCTG
CGCGAATCTG ATACCGCCGC GCGCCTGGGC GGTGACGAGT TTGTGGTGCT GCTGCCTGAC
CTGCAAACCA GCGACGCGGC ACTGGCGGTG GCCGAAAAAA TTCGCGCTGC GCTGGCGCAG
GATTTTGTGA CCACCCAGGG TCTCGTGCTG AGCATTTCGT CGAGCATCGG CGTGGCGTTG
TACCCGGACC ATGGCGAGAC CGAAAAAGAC TTGTTGCGTC TGGGCGATGA GGCCATGTAC
CGGGCAAAAA AGAGCGGATG CAATGCCGTG CAGCTGTGCG TGAAGCCATT GTCAGCGCCC
GCCCCCGAGG CCTGCGACCC GGCGCCGAAG TCCCATGTTC ACCTGCGCTG GAAAGCCGCT
TTTGCCAGCG GCAACCCGGT GATTGATCAG GAGCATGAAA CGCTGTTCCG GCTGGCCAAC
ACACTGCTGG ACGAGGCGGC ATTGCGCCGG CAGCAGCCGG CCGCATTCGA GGCCGCGTTT
GAGGCGCTGC TGGCGCACGT GGTGGAGCAC TTTGCGCATG AAGAAGCTAT TTTGTTGGCG
CACGGCTTTG CCGGCATGGC GGACCATGCG CGCCAGCATC AGGTACTGCT GGCGCGGGCA
CACGCGCTGC ACCTTTCAGC GCTGGCGGCA GATGCAGGGG ATGCCACCGA GGGTGAACTG
GTCAAATTTC TGGTGACCGA GCTGGTCGCG GGCCACATGT TGCACACAGA CAGCGCTTTT
TTCCCCCTGT TTGCCACCCC AGGCGTTCAG ACGCTGGCTG CACCGAAGTT TTCCGGCATC
TGA
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| Protein sequence | MFLQRFQPQS LKTRVTLLTL LIVVLSFLSL ASYMKGLLRE ELLRFTGEQQ RSALNLLTAE
VNHGLQDRLD ILKTVASRVS PTQVDDQAAM NAFLLERPFL AGLFNSGAMI WNRQGVLQAN
MQFLKDGLVA NALDPQELAT VLKDGEAVIG RIHFHSKPNA PAFAMAVPIR NLQGEVIGAL
AGVIRLDQAN FLSQLASHRY GKTGNFFLLD ARQRLIFATS DTPRLMEVLP APGISPWIDR
FVQGFEGTAR VVNPHGVEVL VSIRQIPLAH WYASVTLAPE ETFALIEAIQ PRGRLAALVL
ALFCLTLIWL MLRRQLAPMT AAVNTLDGFV RHNQPPQALP VVRQDEIGQL VGGFNRLLDT
LAQQKKVLQD SEIFKQAVLN SVTAEIAVLN RNGVILTVND AWRRCSQACA AELGQSASST
EVGANYLAAC QSVEADPAAS GTLSAQDGIQ AVLDGRSPRF YLEYTCHSSQ QQRWFSMSVT
PLQGEALQGA VVSLEDISER IQMEKQVRDL AFYDPLTHLP NRRLALERLT QQLVRARRAQ
TRLALLFIDL DKFKPINDAL GHEVGDWVLH AVAQRIQACL RESDTAARLG GDEFVVLLPD
LQTSDAALAV AEKIRAALAQ DFVTTQGLVL SISSSIGVAL YPDHGETEKD LLRLGDEAMY
RAKKSGCNAV QLCVKPLSAP APEACDPAPK SHVHLRWKAA FASGNPVIDQ EHETLFRLAN
TLLDEAALRR QQPAAFEAAF EALLAHVVEH FAHEEAILLA HGFAGMADHA RQHQVLLARA
HALHLSALAA DAGDATEGEL VKFLVTELVA GHMLHTDSAF FPLFATPGVQ TLAAPKFSGI
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