| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3606 |
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| Symbol | |
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| ID | 3962621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4016045 |
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| End bp | 4018318 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637918425 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_524840 |
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| Protein GI | 89902369 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACGTT TTCTGCGTCA TGCGCGACAT TGGCTGCTGC TGGTTGTCTG CCTGGGCGCT
CTGGGCGCGT ACCTCGCCTA CAACCTTCAT GGTGAGCATG AGCGCGTTGA GGCGACGGAA
CGCGAGCGCC TGGCGACACA GTCGAAGGTG ATTGAAGACA ACCTCTCGCG TCAGCTGGTC
GCCATCAACC TCGCGCTCGA ATCGATCATG GTCGAATTGC CCGATTGGGC GGGCCGGCCC
GATGGCCGGG AACTTGTCAG CCGTCGCCTC AAGAGCATGG AAGTATCAAT GCCTTCGGTA
CGCACCTTCG CTGTGCTGGA TGAGAAAGGA ACGGTCACGG CGTCGAACCG TGAAGAACTG
CTGGGGCGCA ATTTTCACGA CCGGGACTAT TTTCAGACAG CGCTGCGGGC GCCGAGTACC
AAGACCCTCT ACGTCAGTGC GCCGTTCAAA ACGGTACTGG ACACATTTGT CATCAGTGTT
GCTCGCGTCA TTACCGGGCC GCAAGGGCAG TTTGCTGGTC TGGTGTCGGC GTCAGTGGAC
CCGGTTGACA TGCAGATATT GCTGAATTCG GTGCGCTATG CCGATGACAT GCGGTCGATG
CTGGTGCACG GTGACGGAAC GATATTTGTC AGCCAGCCCG CGTTGGTCGA TGTAGTCGGC
AAAAATTTGT CTGTTGCGGG CTCCTTTTTC AGACAGCATC TGGAGAGCAA ACGCCCGGTC
AGCTATTTCG AGGGCAAGGC CATCACCACG GGAGACAAGC GACTGCCTGT GCTGCGAACC
ATCCAGCCGG CCGACCTGAC CATGGATAAA CCGCTGGTCG TGTCGGTCAG CCGGGGCTGG
GATGCCATGT TTGCCCCTTG GCAGCGCGAT GTCAGGAGCC AGCTTCTGGT GTACGCACTC
TTCGGGTTGC TGTGCATGGC GGGCCTCATC ATTTATCAGC GGCAACGGGT ACAGCAGCGC
ATGATCAATC AGCGGCTCAA GCTGGCAACG GAGGCCACCG GTGTCGGCAT TTGGGAGTTC
GATCTGAAAA CACGGCGCTA CCACTGGGAC CTGGCGATGT TTGGTTTGTT TGGCTTGAAC
CCCCAGACGG TCAATGCACT CAATAACGAC TGGCAGCAGC TCCTCTTGCC AGGGGAACTG
CTGCGCATGA AGGACGCAAC CCGTGTCACG ATCAAACAAG GCCAGGCGTT TGACTTGACA
TTCCAGATTC GGCGCCAGGA TGGGCAGGTG CGCTTTATGC GCAATCGGGC GGTGCTCTAT
AACGACGGCT CTCACGCGGC CAGTCGCCTG ATCGGAACGA CTGAGGATGT CACCGAACGC
AAGCTGCGGG AAGCCGATCT GCGCGTTGCC GCCACCGCCT TTGAATGCCA GGAATCCATC
ATGGTCACCG ATGCGAACCA GCTGATTCTG CGCGTCAACC GCGCATTTAC CGAGCTGTTT
GGCTACACGG CGCAAGACGT TCTTGGCGCG ACACCGCGGG TTTTGCAATC AGGCCGGCAT
GACCCGGCGT TTTACGCCGC CATGTGGGAT GGCATCACAC GCGGCGGTGC CTGGCAAGGT
GAAATCTGGG ACCGGCGCAA AAACGGGGAG TGCTTCCCGG TTTGGCTCAG CATCACGGTG
GTCTGTGGCG ACGACGGTGG CGTTAGTCAT TACGTGGCCA CCCACACCGA CATCACGCTG
CGCAAGGCGG CTGAAGACGA TATCAGGCAA CTGGCCTTTT ACGACCCGCT GACCGGCCTG
CCGAATCGGC GCTTGCTGCA AGACCGGCTG CATCAGGCGA TGAGCCAGGC CAGACGCGAG
CGCGGCCGCC TGGCGCTGCT GTTCCTTGAT CTGGACAAGT TCAAGCCCGT CAACGATGAT
TTTGGCCACC AGGCGGGTGA CGAATTGTTG CAGGCCGTGG CGCAGCGGCT GCAGGCCTGC
GTGCGCGAGT CAGACACCGT GGCACGCCTG GGCGGCGATG AATTTGTGCT GCTGCTGCCC
AGCATCGAGG CCGCGCAGGA TGCCATGGCG GTCGCCGAGA AAATTCATCA GGCGTTCGGC
AGGCCGTTCA CCCTGTCAGC AGGGCGCAAC GCCACCATGT CGTTCAGCAC CGGCATTGCC
GTCTACCCGG AGCACGCCAG CGATGAGAAG GCGCTGATGC GCCATGCCGA TGAGGCCATG
TACCAGGCCA AGGCGGCCGG GCGCGACCGG TTCGTCCTGT TTGCGCCGGC CTCTGAACCG
GCAACTTTGC TGACCCCCGC CGACAGTGGC GGTACGGCCC CTACCATTGG ATAA
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| Protein sequence | MKRFLRHARH WLLLVVCLGA LGAYLAYNLH GEHERVEATE RERLATQSKV IEDNLSRQLV
AINLALESIM VELPDWAGRP DGRELVSRRL KSMEVSMPSV RTFAVLDEKG TVTASNREEL
LGRNFHDRDY FQTALRAPST KTLYVSAPFK TVLDTFVISV ARVITGPQGQ FAGLVSASVD
PVDMQILLNS VRYADDMRSM LVHGDGTIFV SQPALVDVVG KNLSVAGSFF RQHLESKRPV
SYFEGKAITT GDKRLPVLRT IQPADLTMDK PLVVSVSRGW DAMFAPWQRD VRSQLLVYAL
FGLLCMAGLI IYQRQRVQQR MINQRLKLAT EATGVGIWEF DLKTRRYHWD LAMFGLFGLN
PQTVNALNND WQQLLLPGEL LRMKDATRVT IKQGQAFDLT FQIRRQDGQV RFMRNRAVLY
NDGSHAASRL IGTTEDVTER KLREADLRVA ATAFECQESI MVTDANQLIL RVNRAFTELF
GYTAQDVLGA TPRVLQSGRH DPAFYAAMWD GITRGGAWQG EIWDRRKNGE CFPVWLSITV
VCGDDGGVSH YVATHTDITL RKAAEDDIRQ LAFYDPLTGL PNRRLLQDRL HQAMSQARRE
RGRLALLFLD LDKFKPVNDD FGHQAGDELL QAVAQRLQAC VRESDTVARL GGDEFVLLLP
SIEAAQDAMA VAEKIHQAFG RPFTLSAGRN ATMSFSTGIA VYPEHASDEK ALMRHADEAM
YQAKAAGRDR FVLFAPASEP ATLLTPADSG GTAPTIG
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