| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3602 |
|---|
| Symbol | trpD |
|---|
| ID | 3962617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4012872 |
|---|
| End bp | 4013924 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637918422 |
|---|
| Product | anthranilate phosphoribosyltransferase |
|---|
| Protein accession | YP_524837 |
|---|
| Protein GI | 89902366 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0547] Anthranilate phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01245] anthranilate phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.219845 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAACA CCCACAAAAT CACCCCGCAA GAAGCGCTCT TGCGCACCAT TGAGCACCGC
GAGATTTTTC ACGACGAGAT GCTGCACATC ATGCGCGGCA TCATGACGGG CGAGTGGTCG
CCGGTCATGA TGGCGGCCCT GATCACCGGC CTGCGCGTCA AAAAGGAAAC CATCGGCGAA
ATCACGGCCG CCGCGCAGGT GATGCGCGAG TTCTCCACCA AGGTCAACGT CGCCGACACA
AGCCATCTGG TGGACATTGT GGGCACCGGC GGTGACGGCT CGCACACTTT CAACATTTCA
ACTTGCGCCA TGTTTGTGGC CGCCGCTGCC GGCGCCCGGG TCAGCAAGCA CGGTGGCCGC
AGCGTCAGCA GCAAGAGCGG CAGCGCCGAC GTGATGGAGT CGCTGGGCGT CAACATCAAC
CTGTCGCCCG AGGCCATTGC CCAGTGTATT GAACAGGTGG GGGTCGGCTT TATGTTTGCG
CCCAATCACC ACCCGGCCAT GAAGAACGTG GCGCCGGTGC GCAAGGAGCT GGGCATCAAG
ACCATCTTCA ATCTGCTCGG GCCGCTGACC AACCCGGCGG GAGCCCCCAA TATCCTGATG
GGTGTGTTTC ACCCGGACCT GGTGGGTATT CAGGTGCGCG CGCTGCAGCG GCTGGGCGCC
GAGCACGCGG TCGTGGTGTA TGGCAAAGAC GGTATGGATG AGGTGTCACT GGGCGCGACC
ACGTTGGTCG GAGAGCTCAA ACACGGTGAA ATCACCGAGT ATGAGATTCA CCCGGAAGAC
TTCGGCATGG TCATGGCCAG CAACCGCGCG CTCAAGGTGG AAACGCCGGA GCAGTCCAAA
ACCATGCTGC AGGGGGTGCT GGACAACGCG GCGGGGGCGC CCAAAGACAT CGTGATTCTC
AATGCCGGTG TGGCGCTGTA CGCTGCCAAC GTCGTGCCGA CGATGAGCGC TGGCATTGAC
AAAGCACGAG TGGCCATTGA ATCAGGCGCG GCCAGAGCCA AGCTGGCGCA ACTGGTTTCC
ATGTCCCAAC AACTGAAAGG CGCAGCGAAG TGA
|
|---|
| Protein sequence | MPNTHKITPQ EALLRTIEHR EIFHDEMLHI MRGIMTGEWS PVMMAALITG LRVKKETIGE
ITAAAQVMRE FSTKVNVADT SHLVDIVGTG GDGSHTFNIS TCAMFVAAAA GARVSKHGGR
SVSSKSGSAD VMESLGVNIN LSPEAIAQCI EQVGVGFMFA PNHHPAMKNV APVRKELGIK
TIFNLLGPLT NPAGAPNILM GVFHPDLVGI QVRALQRLGA EHAVVVYGKD GMDEVSLGAT
TLVGELKHGE ITEYEIHPED FGMVMASNRA LKVETPEQSK TMLQGVLDNA AGAPKDIVIL
NAGVALYAAN VVPTMSAGID KARVAIESGA ARAKLAQLVS MSQQLKGAAK
|
|---|
| |