| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3592 |
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| Symbol | rpoB |
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| ID | 3962584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4001536 |
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| End bp | 4005588 |
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| Gene Length | 4053 bp |
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| Protein Length | 1350 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637918408 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_524827 |
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| Protein GI | 89902356 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.115444 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGGAAA TTCCTTACCT GTTGCAAATG CAAAAGGATG CCTACACCGC GTTCCTGCAG
GCTGATGTTC ACCCCAAAAA GCGAACAGCA GAAGGGCTTC AAGCCGCTTT TGAAGCGGCT
TTCCCGATCA TTTCACACAA TGGCTTTGTC GAGATGAAAT ATCTCGAGTA CAACCTGGCC
AAGCCCGCTT TCGACGTGCG TGAGTGCCAG ACCCGTGGTC TGACTTTCGC CTCGGCAGTG
CGCGCCAAGG TTCAGCTGTT CATTTATGAC CGTGAATCGT CGACCTCGCA AAATAAAGTG
ATCAAAGAGG TCAAAGAGCA AGAGGTCTAC ATGGGCGAAG TGCCCCTGAT GACCACCAAG
GGCTCATTTA TTATCAACGG CACGGAGCGC GTGATCGTCT CCCAGTTGCA CCGTTCCCCC
GGTGTGTTCT TTGAACACGA CAAGGGCAAA ACTCACAGTT CGGGCAAGTT GCTGTTCTCG
GCCCGAATCA TTCCATATCG CGGTTCCTGG CTCGATTTTG AATTCGACCC CAAGGACTTT
CTGTACTTCC GTGTGGATCG TCGGCGCAAA ATGCCGGTCA CGATTCTGCT CAAGGCCATT
GGTTTGAACC ATGAGTCCAT CCTGGCGAAC TTCTTCGTCA ATGACAATTT CCGTCTGATG
GACAGTGGTG CCCAAATGGA GTTTGTGGCA GAGCGCCTGC GCGGTGAAGT GGCCCGTTTC
GATATCACCG ACAAGAGTGG CAAAGTGATT GTTGCCAAAG AGAAGCGAGT GACGGCCCGC
CACACCCGCG AACTGGAACA GTCTGGCACC ACGCACATCA GCGTGCCCGA GGATTTCTTG
CTGGGTCGTG TGGTGGCGCG CAATATCGTT GACACCGATA CGGGTGAAAT TCTGGCCAAG
GCCAATGAGG AACTCACGGA AGCACTGATC AAGAAGCTAC GTTTGGCTGG CGTGCAGGAT
CTGCCGTGTA TTTACACCAA TGAACTCGAT CAGGGTGCGT ACATTTCGCA AACCTTGCGC
AGTGACGAAA CGGTGGACGA ATTTGCAGCC CGTGTGGCCA TCTACCGCAT GATGCGCCCG
GGTGAGCCGC CGACCGAGGA CGCGGTGCAG GCGCTGTTCC AGCGCTTGTT CTACAACCCT
GACACCTACG ATCTGTCGCG TGTCGGCCGG ATGAAGTTCA ACGCCAAGAT GGGCCGACCG
GAATCGACTG GCCCCATGGT TCTGACCAAC GAGGATATCC TGGCAGTCGT CAAGATTCTG
GTGGACTTGC GCAATGGTCG CGGCGACGTG GACGACATTG ACCACCTTGG CAACCGGCGT
GTGCGTTGCG TGGGTGAGCT GGCCGAAAAC CAGTACCGGA CCGGTCTGGC GCGGATTGAA
AAAGCGGTCA AGGAGCGTCT GGGTCAGGCC GAGCAGGAGC CACTCATGCC GCATGACCTG
ATCAACAGCA AGCCCATTTC GGCGGCACTG AAAGAGTTCT TCGGCGCTTC GCAGTTGTCC
CAGTTCATGG ATCAGACCAA CCCGTTGTCG GAGATCACCC ACAAGCGCCG CGTATCGGCC
CTTGGCCCAG GTGGTTTGAC GCGCGAGCGC GCCGGCTTTG AAGTGCGTGA CGTGCACGTG
ACCCATTACG GTCGCGTGTG CCCGATTGAA ACGCCAGAAG GTCCGAACAT CGGCCTGATC
AATTCGCTGG CGCTGTATGC CCGCCTCAAC GATTACGGTT TCATTGAAAC GCCCTATCGT
CGCGTGGTTG ATGGCAAGGT CACGATGGAG ATTGACTATT TGTCGGCGAT TGAAGAAGGT
AAATTCGTCA TCGCGCAGGC CAATGCGGTA CTGGATAAGG ACGGCAAGCT CACGGGCGAG
ATGATCTCTG CGCGTGAAGC AGGTGAAACG ATTTTTGCCG GGCCCGAGCG TGTGCAATAC
ATGGACGTGT CGCCAGCACA GATCGTGTCA GTGGCTGCCT CCTTGGTGCC GTTTCTGGAG
CACGATGATG CGAACCGCGC CTTGATGGGT GCAAATATGT CGCGTCAGGC CGTGCCGATT
CTGCGCCCGG AAAAGCCAAT GGTTGGCACA GGCATTGAGC GCGTTGCGGC GATTGACTCC
GGCACTGTCG TGACTGCAAC GCGGGGCGGC ATGGTGGATT ACGTGGATGC AACCCGGGTT
GTGATTCGCG TCAATGACGA CGAGGCACAA GCCGGTGAAG TGGGTGTTGA TATTTACAAC
CTCATCAAAT ACCAGCGCTC CAATCAAAAT ACCAATATCC ATCAGCGGCC CATTGTCAAA
AAGGGCGACA TGCTGGCCAA GGGAGACGTC ATTGCTGACG GTGCTTCCAC CGATCTGGGT
GAACTGGCTT TGGGCCAGAA CATGCTCATT GGCTTCATGA CCTGGAACGG CTACAACTTC
GAAGATTCAA TTTTGATCAG CGAACGCGTG GTGGCAGACG ATCGCTATAC CTCGATTCAT
ATTGAGGAGT TGGTCGTGAT GGCGCGTGAT ACCAAACTTG GTTGTGAAGA AATCACCCGT
GACATTCCGA ACTTGAGCGA ACAACAGCTT AATCGTCTGG ATGAGTCCGG CATCATTTAC
GTTGGCGCCG AAGTTCAGCC GGGTGACACG CTGGTGGGCA AAGTTACCCC CAAGGGCGAG
ACCACACTGA CACCGGAAGA GAAGCTGCTG CGTGCCATCT TCGGTGAAAA AGCCAGTGAC
GTGAAAGACA CGTCATTGCG TGTGGACCAG GGCTCCCAGG GGACCGTGAT CGACGTGCAG
GTCTTTACCC GCGAAGGCAT CGTGCGCGAC CGCCGGGCAC AACAAATCAT TGATGACGAA
CTCAAGCGTT TCCGGCTTGA CTTGAATGAC CAACTGCGTC TCGTGGAAGC CGATTCATTT
GACCGGATCG AGAAGTTACT GGTTGGCAAA GTGGCCAATG GGGGTCCGCA AAAACTTGCC
AAAGGCACGA CCATTGACAA GGCGTATTTG ACTTCGGTTG AAAAACACCA CTGGTTTGAT
ATTCGTCCGG CTGAAGACGA TGTCGCAGCT CAATTGGAGA GCATCAAGAA CTCGATGGAG
CAGACCCGGC ACAGCTTCGA TCTCGCCTTT GAAGAAAAAC GCAAGAAGTT GACCCAAGGC
GACGAGTTGC CTGCTGGTGT CTTGAAGATG GTCAAGGTTT ATCTGGCTGT CAAACGCCAT
CTGCAACCGG GCGACAAAAT GGCCGGCCGC CACGGCAACA AGGGCGTGGT GTCCAAGATC
GTCCCGGTTG AAGACATGCC GTTCATGGCG GATGGCACGC CTTGCGATAT TGTGCTCAAT
CCCCTGGGTG TGCCGTCACG GATGAATATC GGCCAGGTGC TCGAAGTCCA TCTGGGATGG
GCTGCAAAAG GTATTGGACA GCGCATTGGT GACATGTTGC AGGCTGAAGC CAAGGTGGCC
GAATTGCGCA AGTTCCTGGA CGAGCTCTAC AACGGTACCG GTCGCAAGGA AGACCTGGCT
CAACTGAGTG ACGACGAAGT GCTGGAAATG GCTGGTAATC TGACGTCGGG TGTGCCGTTC
GCCACGCCCG TGTTTGACGG CGCATCGGAG GCTGACATCG GGGCCATGCT CAAGCTCGCT
TACCCTGAGG ATGCGATCAG GCAAAAGGGG CTCACCCCGG CGCGCACCCA AGCTTACCTG
TACGACGGCC GCACCGGCGA CCCGTTTGAG CGGCCCACGA CGATTGGTTA CATGCACTAT
TTGAAGCTGC ACCATTTGGT GGACGACAAA ATGCATGCCC GTTCCACTGG CCCGTACAGT
CTCGTCACGC AGCAACCGTT GGGGGGCAAG GCTCAGTTTG GTGGTCAGCG CTTCGGTGAG
ATGGAGGTCT GGGCGCTCGA AGCGTACGGG GCTGCCTACA CGTTGCAGGA AATGCTCACA
GTCAAATCAG ATGACGTGCA GGGCCGTACC AAGGTGTACG AGAGCATTGT CAAGGGTGAG
CATTCGATCG AAGCCGGCAT GCCGGAGTCG TTCAATGTGC TGGTCAAGGA AATTCGCTCA
CTCGGTATTG ATATCGAGCT GGAACGCGGC TAG
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| Protein sequence | MLEIPYLLQM QKDAYTAFLQ ADVHPKKRTA EGLQAAFEAA FPIISHNGFV EMKYLEYNLA
KPAFDVRECQ TRGLTFASAV RAKVQLFIYD RESSTSQNKV IKEVKEQEVY MGEVPLMTTK
GSFIINGTER VIVSQLHRSP GVFFEHDKGK THSSGKLLFS ARIIPYRGSW LDFEFDPKDF
LYFRVDRRRK MPVTILLKAI GLNHESILAN FFVNDNFRLM DSGAQMEFVA ERLRGEVARF
DITDKSGKVI VAKEKRVTAR HTRELEQSGT THISVPEDFL LGRVVARNIV DTDTGEILAK
ANEELTEALI KKLRLAGVQD LPCIYTNELD QGAYISQTLR SDETVDEFAA RVAIYRMMRP
GEPPTEDAVQ ALFQRLFYNP DTYDLSRVGR MKFNAKMGRP ESTGPMVLTN EDILAVVKIL
VDLRNGRGDV DDIDHLGNRR VRCVGELAEN QYRTGLARIE KAVKERLGQA EQEPLMPHDL
INSKPISAAL KEFFGASQLS QFMDQTNPLS EITHKRRVSA LGPGGLTRER AGFEVRDVHV
THYGRVCPIE TPEGPNIGLI NSLALYARLN DYGFIETPYR RVVDGKVTME IDYLSAIEEG
KFVIAQANAV LDKDGKLTGE MISAREAGET IFAGPERVQY MDVSPAQIVS VAASLVPFLE
HDDANRALMG ANMSRQAVPI LRPEKPMVGT GIERVAAIDS GTVVTATRGG MVDYVDATRV
VIRVNDDEAQ AGEVGVDIYN LIKYQRSNQN TNIHQRPIVK KGDMLAKGDV IADGASTDLG
ELALGQNMLI GFMTWNGYNF EDSILISERV VADDRYTSIH IEELVVMARD TKLGCEEITR
DIPNLSEQQL NRLDESGIIY VGAEVQPGDT LVGKVTPKGE TTLTPEEKLL RAIFGEKASD
VKDTSLRVDQ GSQGTVIDVQ VFTREGIVRD RRAQQIIDDE LKRFRLDLND QLRLVEADSF
DRIEKLLVGK VANGGPQKLA KGTTIDKAYL TSVEKHHWFD IRPAEDDVAA QLESIKNSME
QTRHSFDLAF EEKRKKLTQG DELPAGVLKM VKVYLAVKRH LQPGDKMAGR HGNKGVVSKI
VPVEDMPFMA DGTPCDIVLN PLGVPSRMNI GQVLEVHLGW AAKGIGQRIG DMLQAEAKVA
ELRKFLDELY NGTGRKEDLA QLSDDEVLEM AGNLTSGVPF ATPVFDGASE ADIGAMLKLA
YPEDAIRQKG LTPARTQAYL YDGRTGDPFE RPTTIGYMHY LKLHHLVDDK MHARSTGPYS
LVTQQPLGGK AQFGGQRFGE MEVWALEAYG AAYTLQEMLT VKSDDVQGRT KVYESIVKGE
HSIEAGMPES FNVLVKEIRS LGIDIELERG
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