| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3591 |
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| Symbol | |
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| ID | 3962583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3997240 |
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| End bp | 4001457 |
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| Gene Length | 4218 bp |
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| Protein Length | 1405 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637918407 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_524826 |
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| Protein GI | 89902355 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.151123 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCAT TACTCGACCT GTTCAAGCAG TTCACGCCGG ATGAGCATTT CAATGCCATC
AAGATTGGCA TGGCTTCTCC CGAGAAGATC CGTTCGTGGT CGTTCGGCGA AGTCAAAAAG
CCGGAAACCA TCAACTACCG CACCTTCAAG CCCGAGCGGG ATGGTCTGTT TTGCGCCAAG
ATTTTCGGAC CCATCAAGGA CTACGAATGC TTGTGCGGCA AGTACAAGCG CCTCAAGCAC
CGTGGCGTGA TCTGTGAAAA GTGCGGCGTT GAAGTGACCC AGACCAAAGT GCGTCGCGAG
CGCATGGGCC ACATCGACCT GGCGGCACCT TGTGCCCATA TCTGGTTCCT GAAATCGCTG
CCGTCGCGTC TGGGCCTGGT GCTCGACATG ACCTTGCGTG ACATCGAACG CGTGCTGTAT
TTTGAAGCCT ATGTTGTGAC CGATCCGGGC ATGACGCCGC TGAAAAAATT CAGCATCATG
TCCGAAGATG ACTTTGACGC CAAATTCAAG GAATATGGCG ACGAGTTTCA GGCCAAGATG
GGCGCTGAGG GCATTAAAGA TTTGCTTCAG AGCCTTGATA TTGATGGTTC GATCGAGCGG
CTGCGTAACG ACCCCACGGG CTCCGAGCTG AAGATCAAGA AGAACACCAA GCGACTCAAA
TTGCTTGAAG CGTTCAAAAA ATCCGGCATC AAGCCGGAGT GGATGGTGCT CGAAGTGTTG
CCCGTGTTGC CACCGGACTT GCGTCCCCTG GTGCCGCTGG ACGGTGGCCG TTTCGCCACC
TCCGATCTGA ACGACTTGTA TCGTCGCGTG ATCAACCGCA ACAGCCGTCT GCGTCGTTTG
CTTGAATTGA AGGCGCCCGA GATCATTGCC CGCAATGAAA AGCGCATGCT GCAAGAAGCC
GTGGATTCGC TGCTCGACAA CGGCCGTCGC GGCAAAGCCA TGACCGGCGC CAACAAGCGT
GCCCTCAAGT CGCTGGCCGA CATGATCAAA GGCAAATCGG GACGTTTCCG TCAGAATTTG
CTCGGTAAAC GGGTCGATTA CTCGGGTCGT TCCGTGATTG TGGTGGGCCC CACGCTCAAA
CTCCATCAGT GCGGCTTGCC CAAGCTGATG GCGCTTGAAT TGTTCAAGCC TTTCATCTTC
GCGCGCCTGG AAGCCATGGG CATTGCGACC ACCATCAAGG CGGCCAAGAA GGAAGTTGAA
TCCGGCACCC CGGTGGTGTG GGACATCCTG GAAGAGGTGA TCAAAGAGCA CCCTGTGATG
CTGAACCGTG CGCCAACCCT GCACCGTTTG GGCATTCAGG CGTTTGAGCC CATCTTGATT
GAAGGCAAGG CGATTCAACT GCACCCGCTG GTTTGCGCTG CATTCAATGC CGACTTTGAC
GGTGACCAGA TGGCGGTTCA CGTGCCGTTG TCGGTGGAAG CGCAAGTGGA ATGCCGCACG
TTGATGCTTG CGTCCAACAA TGTGCTGTTC CCGTCCAACG GCGAGCCGTC GATTGTGCCC
TCGCAAGACG TGGTGCTGGG CTTGTATTAC ACAACCCGGG AGCGTATCAA TGGCAAGGGT
GAGGGCCTGA TTTTCGCCGA CGTCGGTGAA GTGCAGCGCG CGTTCGATGG CGGTGCGGTG
GAACTGAACT CCCGTATCAA TGTGCGGCTG ACCGAGTACA TCAAGGACAA GCAGACCGGC
GAATTGGTGC CTTCGACCAA GCTGTGGGAA ACCACCGCAG GACGCGCCTT GTTGTCGGAA
ATTTTGCCCA AGGGCCTGCC TTTTGAAAAC GTGAACAAGG CGCTGAAGAA GAAAGAAATT
TCCAAGCTGA TCAATGTGTC GTTCCGCAAA TGCGGTCTCA AAGAGACCGT GGTGTTTGCC
GACAAGTTGC TGCAATATGG TTTCCGGCTG GCCACCAAGG CCGGTATCTC GATCTGTCTT
GATGATATGT TGGTGCCGAC CGAAAAGCCG GGCATCATTG AGCAAGCCGA GCAAGAGGTC
AAGGAAATTG CGCAGCAGTA CACCTCGGGT CTGGTGACTT CAGGCGAGCG CTATAACAAG
GTGGTGGACA TCTGGGGCAA GGCCGGCGAC GAGGTGTCCA AGGTCATGAT GGCTCAGTTG
TCCAAGGAAA TTGTCACGGA TCGTCATGGC CAGCAGGTAC AGCAGGAGTC CTTTAACTCC
ATCTACATGA TGGCGGATTC CGGTGCGCGC GGTTCGCCAG CGCAGATTCG TCAGGTGGCC
GGCATGCGGG GCCTGATGGC CAAGCCCGAC GGCTCCATCA TTGAGACGCC GATCACCGCG
AACTTCCGCG AGGGCCTGAA CGTGCTGGAA TACTTTATTT CCACCCACGG CGCACGAAAA
GGTCTTGCCG ACACGGCCTT GAAGACAGCC AACTCGGGTT ACCTGACGCG TCGTCTGGTC
GATGTGACGC AGGATCTGGT CGTGACCGAA CAGGACTGTG GCACGCACAG CGGTTACCTG
ATGCGCGCCA TCGTCGAAGG CGGTGAAGTC ATAGAGTCGT TGCGTGATCG TATTCTGGGT
CGTACGGCGG CCGATGATGT GTTGCATCCG GAGAATCGTT CCGTGCTGGC TCCGGCCGGC
ACGATGCTCG ACGAAGACCA GATCGATGAG CTTGAGGTGG CGGGCGTCGA TGAAGTCAAA
GTGCGCACGG CGCTGACTTG CGAGACTCGT TTTGGTATTT GCGCCAAATG CTACGGCCGC
GATCTGGGTC GGGGCGGCTT GGTCAACGGG GGCGAAGCGG TGGGTGTGAT TGCCGCGCAA
TCCATCGGTG AGCCCGGTAC GCAGTTGACC ATGCGTACCT TCCACATTGG CGGGGCCGCC
TCGCGTGCGG CCATCGCGTC CAGCGTGGAA GCCAAGTCCA ACGGCAACAT CGGCTTCAAC
GCCACGATGC GTTATGTGAC GAATGGCAAA AAGGAATTGG TGGTGATTTC CCGTTCCGGC
GAGATCGTCA TCCATGACGA GCATGGCCGT GAGCGTGAAC GTCACAAGGT GCCGTATGGC
GCCGTGTTGG CCGTGAAAGC GGATCAGACC ATCAAGTCGG GCGCGATCCT GGCCAATTGG
GATCCTTTGA CGCGACCGAT CATTACCGAG TTTGCGGGTA AGGCCCATTT CGAAAATGTC
GAAGAAGGCC TGACGGTGGC CAAACAGGTG GACGAGGTGA CCGGTTTGTC CACCATGGTG
GTGATCGATC CGAAACACCG CGGTTCGGCC AAGGTCATCC GTCCGATCGT CAAGTTGATT
GATGCGAGCG GCAACGAGGT CAAGATTCCC GGCACCGACC ATTCCGTGAC CATCGGCTTC
CCGATTGGTG CGCTGGTTCA GGTGCGCGAC GGTCAGGATG TGAGCCCAGG CGAAGTGCTG
GCACGGATTC CTATCGAGGG CCAAAAAACC CGCGATATTA CCGGCGGCTT GCCGCGGGTT
GCCGAGCTGT TTGAAGCCCG GTCGCCCAAA GACAAGGGCG TTTTGGCTGA AATGACGGGA
ACCGTGTCTT TTGGCAAGGA AACCAAAGGC AAGATTCGCC TGCAGATCAC CGATCCGGAT
GGCGCTGTCT GGGAAGACTT GGTGCCCAAG GAGAAAAACA TCATCGTGCA CGAAGGCCAG
GTCGTCAACA AGGGCGAAAG CGTGGTCGAT GGTCCGGCTG ATCCGCAGGA CATCTTGCGA
TTGCTCGGCT CCGAGGAACT GGCACGCTAC ATTGTTGACG AGGTGCAGGA CGTGTACCGT
TTGCAGGGTG TGAAGATCAA TGACAAGCAC ATCGAAGTGA TTGTTCGCCA GATGTTGCGC
CGGGTCGTGG TCGAGAATGC TGGTGACTCC ACCTATATCA ACGGAGAGCA AGTGGAGCGC
TCGGAAATTC TCAATACCAA TGACGCCTTG CGCGCCGACG GCAAGATTCC AGCGCGCTTT
ACCAATCTGC TGCTGGGTAT TACCAAGGCA TCCTTGTCGA CCGACAGTTT CATCAGTGCG
GCATCCTTCC AGGAAACCAC GCGGGTGCTG ACTGAAGCGG CCATCATGGG TAAGCGCGAC
GAATTGCGCG GCTTGAAAGA AAACGTCATT GTGGGTCGAC TGATTCCTGC CGGTACCGGC
ATGGCTTATC ACGAAGCCCG CAAGGTTCGC GAGAACATGG ACGACACTGA GCGCCGGGCC
ATTGCCGAGG CAGAAGCCGC CGAACTGGCG GGTCAGGCAG AGGCAACGGA AGCCAATGAA
GGAGCAGCAG CCGAGTAA
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| Protein sequence | MKSLLDLFKQ FTPDEHFNAI KIGMASPEKI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLAAP CAHIWFLKSL
PSRLGLVLDM TLRDIERVLY FEAYVVTDPG MTPLKKFSIM SEDDFDAKFK EYGDEFQAKM
GAEGIKDLLQ SLDIDGSIER LRNDPTGSEL KIKKNTKRLK LLEAFKKSGI KPEWMVLEVL
PVLPPDLRPL VPLDGGRFAT SDLNDLYRRV INRNSRLRRL LELKAPEIIA RNEKRMLQEA
VDSLLDNGRR GKAMTGANKR ALKSLADMIK GKSGRFRQNL LGKRVDYSGR SVIVVGPTLK
LHQCGLPKLM ALELFKPFIF ARLEAMGIAT TIKAAKKEVE SGTPVVWDIL EEVIKEHPVM
LNRAPTLHRL GIQAFEPILI EGKAIQLHPL VCAAFNADFD GDQMAVHVPL SVEAQVECRT
LMLASNNVLF PSNGEPSIVP SQDVVLGLYY TTRERINGKG EGLIFADVGE VQRAFDGGAV
ELNSRINVRL TEYIKDKQTG ELVPSTKLWE TTAGRALLSE ILPKGLPFEN VNKALKKKEI
SKLINVSFRK CGLKETVVFA DKLLQYGFRL ATKAGISICL DDMLVPTEKP GIIEQAEQEV
KEIAQQYTSG LVTSGERYNK VVDIWGKAGD EVSKVMMAQL SKEIVTDRHG QQVQQESFNS
IYMMADSGAR GSPAQIRQVA GMRGLMAKPD GSIIETPITA NFREGLNVLE YFISTHGARK
GLADTALKTA NSGYLTRRLV DVTQDLVVTE QDCGTHSGYL MRAIVEGGEV IESLRDRILG
RTAADDVLHP ENRSVLAPAG TMLDEDQIDE LEVAGVDEVK VRTALTCETR FGICAKCYGR
DLGRGGLVNG GEAVGVIAAQ SIGEPGTQLT MRTFHIGGAA SRAAIASSVE AKSNGNIGFN
ATMRYVTNGK KELVVISRSG EIVIHDEHGR ERERHKVPYG AVLAVKADQT IKSGAILANW
DPLTRPIITE FAGKAHFENV EEGLTVAKQV DEVTGLSTMV VIDPKHRGSA KVIRPIVKLI
DASGNEVKIP GTDHSVTIGF PIGALVQVRD GQDVSPGEVL ARIPIEGQKT RDITGGLPRV
AELFEARSPK DKGVLAEMTG TVSFGKETKG KIRLQITDPD GAVWEDLVPK EKNIIVHEGQ
VVNKGESVVD GPADPQDILR LLGSEELARY IVDEVQDVYR LQGVKINDKH IEVIVRQMLR
RVVVENAGDS TYINGEQVER SEILNTNDAL RADGKIPARF TNLLLGITKA SLSTDSFISA
ASFQETTRVL TEAAIMGKRD ELRGLKENVI VGRLIPAGTG MAYHEARKVR ENMDDTERRA
IAEAEAAELA GQAEATEANE GAAAE
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