| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3572 |
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| Symbol | |
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| ID | 3961417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3972888 |
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| End bp | 3974864 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637918387 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_524807 |
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| Protein GI | 89902336 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGAAA ATCTGATCAA TTTTCAATTG ATTCTCACCA CCATCAGCGA TGGCATCGTG
GTGGTGGATC AGCGTGGCGT GGTGCTTTAT GCCAATGAAA GCGCCGAGCG CCTGTTCGAG
CGTGGCGAGC TGGTGGGTAA AGATCTGGCC GTGCCGATCC ACTCCGGCGA AACCCGTCAA
GACATCAACC TGATTCGCCC CAGCGGCATT GGCTGGGCCG AGTTGCGCTC GGCCCCCATC
ACCTGGGACA AACAACCGGC TTTCGTGATT TGTGTGCGCG ACATCACCGA GCGCAAGACG
TCGGACCTTG GATTGCATCT GGCCGACACG GTGTTTGACA GCACCCGCGA AGGGCTGATG
GTGACCGATA GCGCGCAGCG CATCGTGCGC ATCAACCCCG CGTTCTCCGA GATCACCGGG
TACAGCGCGG CTGACGTTCT TGACCAAACG CCGGCGCTGC TGCGCTCGGG TCGGCATGAC
AGCGCGTTTT ACGCGGCGAT GTGGGACAGC ATCAACGTCA GCGGGCATTG GCAGGGTGAA
GTCTGGAATC GCCGCAAAAA CAGCGAGATT TATCCGCAAT TGATCAGCAT CGACGTGATC
AGGGACCACA CCGGCAGGGT CTGCAATTAC GTGGCGGTGT TGACCGACCT GTCCAAACTG
CGCAGTTCGC AGCTGGAGCT CGATTTCCTG GCCCACCACG ACCCCTTGAC ACGCTTGCCG
AACCGCTTGT TGCTGCTGTC ACGGTTGCAG CACGGCATTG AGCTGGCGCA GCGGGACGGC
ACGCATCTGG CGCTGCTGAT GCTTGATCTG GATCGTTTCA AGGACATCAA CGACAGTTTT
GGTCATCTGG TGGGTGATGA GTTATTGCAG CTGGTGGCCA CCCGGCTGGT CAAGCAGGTG
CGCACCATCG ACACGGTCGG CCGCTTTGGT GGCGACGAAT TTTCCGTGTT GATGGAAGAC
GTGGCCGGGG CCGAACAGGC GGCGCGGGTG GCCAATGACA TCATCCGTGT CTTGAGCGAG
CCCTATGGCT TGTCCAGCGG CGTTGAAGTG CGCATTGGGG CGAGTGTGGG CATCAGTATT
TATCCGGACA ACGGCCTCAC GCCCGAGTTG ATGCTGCAAC AGGCCGACAG CGCGTTGTAC
CAGGCCAAAA TCGAAGGGCG CGGCCGGTTT GCGTATTTTT CCGAGAGCCT GACCCAAGCC
GCGCGTGCGC GCATCGACAT TGAAGTGCGT TTGCGCCGCG CCATCACGCA GGGCGAGCTG
CGCGTGTATT ACCAGCCGCA AGTGGACATC CCCAGCGGGC GCATCGTCGG TGCCGAAGCC
TTGGTGCGCT GGCAGTGCCC GATCGAAGGC CTGGTACCGC CGGCGCGCTT CATCACCATC
GCAGAGGCGA CCGGTTTGAT CGGCGAAATC GATGACTGGG TGTTGCGAGA AACCTGTCAG
CAAGGTCAGC GCTGGCGCGC GGCGGGCCTG CCCACGCTCA CCCTGGCGGT CAATCTCTCG
GCCTACCAGT TTTTGCAGGG TGACATCAGC CAGACCGTGG CCCAGGTGCT GCGTGATACC
GGATATCCGG CGGCGTTTTT GGAACTGGAG TTGACCGAAA GCGCCCTGAT GCAGCGTGAA
GCCCAGGCCA TCCAGATGCT CGACCGGCTC AAAGCTCTCG GTGTGCGCCT GGCGATTGAC
GACTTTGGCA CCGGCTACTC GTCACTGGCT TATCTCAAGC TGTTTCCCCT GGATGTGCTG
AAAATCGACA AGCGCTTTAT TGACGATATT CCGGCGCACC GCGACGACAT GGAAATTGTC
ACGGCCATCA TTGCCATGGC GCACAGCTTG CGCCTGAAAG TGCTGGCCGA GGGGGTGGAA
AACAAAGAGC AGCTGGCCTA TTTGCAAACC CAGGGCTGCG ACCAGTTCCA GGGTTATCTG
ACCAGCCGCC CCGTGCCCGC CGCAGAATTT GAGAAATTAT TCCTGAGCGG GCGCTAA
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| Protein sequence | MTENLINFQL ILTTISDGIV VVDQRGVVLY ANESAERLFE RGELVGKDLA VPIHSGETRQ
DINLIRPSGI GWAELRSAPI TWDKQPAFVI CVRDITERKT SDLGLHLADT VFDSTREGLM
VTDSAQRIVR INPAFSEITG YSAADVLDQT PALLRSGRHD SAFYAAMWDS INVSGHWQGE
VWNRRKNSEI YPQLISIDVI RDHTGRVCNY VAVLTDLSKL RSSQLELDFL AHHDPLTRLP
NRLLLLSRLQ HGIELAQRDG THLALLMLDL DRFKDINDSF GHLVGDELLQ LVATRLVKQV
RTIDTVGRFG GDEFSVLMED VAGAEQAARV ANDIIRVLSE PYGLSSGVEV RIGASVGISI
YPDNGLTPEL MLQQADSALY QAKIEGRGRF AYFSESLTQA ARARIDIEVR LRRAITQGEL
RVYYQPQVDI PSGRIVGAEA LVRWQCPIEG LVPPARFITI AEATGLIGEI DDWVLRETCQ
QGQRWRAAGL PTLTLAVNLS AYQFLQGDIS QTVAQVLRDT GYPAAFLELE LTESALMQRE
AQAIQMLDRL KALGVRLAID DFGTGYSSLA YLKLFPLDVL KIDKRFIDDI PAHRDDMEIV
TAIIAMAHSL RLKVLAEGVE NKEQLAYLQT QGCDQFQGYL TSRPVPAAEF EKLFLSGR
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