Gene Rfer_3572 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3572 
Symbol 
ID3961417 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3972888 
End bp3974864 
Gene Length1977 bp 
Protein Length658 aa 
Translation table11 
GC content60% 
IMG OID637918387 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_524807 
Protein GI89902336 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGAAA ATCTGATCAA TTTTCAATTG ATTCTCACCA CCATCAGCGA TGGCATCGTG 
GTGGTGGATC AGCGTGGCGT GGTGCTTTAT GCCAATGAAA GCGCCGAGCG CCTGTTCGAG
CGTGGCGAGC TGGTGGGTAA AGATCTGGCC GTGCCGATCC ACTCCGGCGA AACCCGTCAA
GACATCAACC TGATTCGCCC CAGCGGCATT GGCTGGGCCG AGTTGCGCTC GGCCCCCATC
ACCTGGGACA AACAACCGGC TTTCGTGATT TGTGTGCGCG ACATCACCGA GCGCAAGACG
TCGGACCTTG GATTGCATCT GGCCGACACG GTGTTTGACA GCACCCGCGA AGGGCTGATG
GTGACCGATA GCGCGCAGCG CATCGTGCGC ATCAACCCCG CGTTCTCCGA GATCACCGGG
TACAGCGCGG CTGACGTTCT TGACCAAACG CCGGCGCTGC TGCGCTCGGG TCGGCATGAC
AGCGCGTTTT ACGCGGCGAT GTGGGACAGC ATCAACGTCA GCGGGCATTG GCAGGGTGAA
GTCTGGAATC GCCGCAAAAA CAGCGAGATT TATCCGCAAT TGATCAGCAT CGACGTGATC
AGGGACCACA CCGGCAGGGT CTGCAATTAC GTGGCGGTGT TGACCGACCT GTCCAAACTG
CGCAGTTCGC AGCTGGAGCT CGATTTCCTG GCCCACCACG ACCCCTTGAC ACGCTTGCCG
AACCGCTTGT TGCTGCTGTC ACGGTTGCAG CACGGCATTG AGCTGGCGCA GCGGGACGGC
ACGCATCTGG CGCTGCTGAT GCTTGATCTG GATCGTTTCA AGGACATCAA CGACAGTTTT
GGTCATCTGG TGGGTGATGA GTTATTGCAG CTGGTGGCCA CCCGGCTGGT CAAGCAGGTG
CGCACCATCG ACACGGTCGG CCGCTTTGGT GGCGACGAAT TTTCCGTGTT GATGGAAGAC
GTGGCCGGGG CCGAACAGGC GGCGCGGGTG GCCAATGACA TCATCCGTGT CTTGAGCGAG
CCCTATGGCT TGTCCAGCGG CGTTGAAGTG CGCATTGGGG CGAGTGTGGG CATCAGTATT
TATCCGGACA ACGGCCTCAC GCCCGAGTTG ATGCTGCAAC AGGCCGACAG CGCGTTGTAC
CAGGCCAAAA TCGAAGGGCG CGGCCGGTTT GCGTATTTTT CCGAGAGCCT GACCCAAGCC
GCGCGTGCGC GCATCGACAT TGAAGTGCGT TTGCGCCGCG CCATCACGCA GGGCGAGCTG
CGCGTGTATT ACCAGCCGCA AGTGGACATC CCCAGCGGGC GCATCGTCGG TGCCGAAGCC
TTGGTGCGCT GGCAGTGCCC GATCGAAGGC CTGGTACCGC CGGCGCGCTT CATCACCATC
GCAGAGGCGA CCGGTTTGAT CGGCGAAATC GATGACTGGG TGTTGCGAGA AACCTGTCAG
CAAGGTCAGC GCTGGCGCGC GGCGGGCCTG CCCACGCTCA CCCTGGCGGT CAATCTCTCG
GCCTACCAGT TTTTGCAGGG TGACATCAGC CAGACCGTGG CCCAGGTGCT GCGTGATACC
GGATATCCGG CGGCGTTTTT GGAACTGGAG TTGACCGAAA GCGCCCTGAT GCAGCGTGAA
GCCCAGGCCA TCCAGATGCT CGACCGGCTC AAAGCTCTCG GTGTGCGCCT GGCGATTGAC
GACTTTGGCA CCGGCTACTC GTCACTGGCT TATCTCAAGC TGTTTCCCCT GGATGTGCTG
AAAATCGACA AGCGCTTTAT TGACGATATT CCGGCGCACC GCGACGACAT GGAAATTGTC
ACGGCCATCA TTGCCATGGC GCACAGCTTG CGCCTGAAAG TGCTGGCCGA GGGGGTGGAA
AACAAAGAGC AGCTGGCCTA TTTGCAAACC CAGGGCTGCG ACCAGTTCCA GGGTTATCTG
ACCAGCCGCC CCGTGCCCGC CGCAGAATTT GAGAAATTAT TCCTGAGCGG GCGCTAA
 
Protein sequence
MTENLINFQL ILTTISDGIV VVDQRGVVLY ANESAERLFE RGELVGKDLA VPIHSGETRQ 
DINLIRPSGI GWAELRSAPI TWDKQPAFVI CVRDITERKT SDLGLHLADT VFDSTREGLM
VTDSAQRIVR INPAFSEITG YSAADVLDQT PALLRSGRHD SAFYAAMWDS INVSGHWQGE
VWNRRKNSEI YPQLISIDVI RDHTGRVCNY VAVLTDLSKL RSSQLELDFL AHHDPLTRLP
NRLLLLSRLQ HGIELAQRDG THLALLMLDL DRFKDINDSF GHLVGDELLQ LVATRLVKQV
RTIDTVGRFG GDEFSVLMED VAGAEQAARV ANDIIRVLSE PYGLSSGVEV RIGASVGISI
YPDNGLTPEL MLQQADSALY QAKIEGRGRF AYFSESLTQA ARARIDIEVR LRRAITQGEL
RVYYQPQVDI PSGRIVGAEA LVRWQCPIEG LVPPARFITI AEATGLIGEI DDWVLRETCQ
QGQRWRAAGL PTLTLAVNLS AYQFLQGDIS QTVAQVLRDT GYPAAFLELE LTESALMQRE
AQAIQMLDRL KALGVRLAID DFGTGYSSLA YLKLFPLDVL KIDKRFIDDI PAHRDDMEIV
TAIIAMAHSL RLKVLAEGVE NKEQLAYLQT QGCDQFQGYL TSRPVPAAEF EKLFLSGR