| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3557 |
|---|
| Symbol | |
|---|
| ID | 3961149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3957052 |
|---|
| End bp | 3957873 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637918372 |
|---|
| Product | ABC transporter |
|---|
| Protein accession | YP_524792 |
|---|
| Protein GI | 89902321 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | [TIGR01291] ABC-2 type transporter, NodJ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0929254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACTC AAACGAACAC CCCAGTCCAT CAATCAGTCT GGCGCGCGCC CGAACTCTCA
ATGCGCTGGT GGCCGGTATT CCTGCGCAAT CTGCTGGTCT GGCGCAAGCT GGCCATTCCC
AGCCTGGTGG GCAATATTGC CGAACCATTG ATGTGGCTGG TCGCTTTTGG CTACGGCATG
GGCGCGCTGG TCGGCAAGGT CAGCGTCGAC GGCACGCCGG TGCCCTACAT CCTGTTTCTG
GCCAGCGGCT CGATCTGCAT GAGCGCCATG CAGGCGGCCA GTTTTGAGGC GCTGTACTCG
GCGTTTTCGC GCATGCATGT GCAAAAAACG TGGGACGGCA TCATGAATGC GCCGGTGAAC
CTGGACGACA TCGTGCTGGC CGAGATGCTG TGGGCCGCGT TCAAGGCGCT GTTCACCGTG
ACGGCCATTC TGGGCGTGAT GCTGGCCCTG GGCATCAGCT ACAGCCCGAA GCTGCTGGTG
GCCTGGCCGG TGCTGCTGGG CGTGGGCATC ACCTTCAGTT GTATTGCGCT GATCTTTAAC
GCGCTGGCCA AGGGCTACGA CTTTTTCACC TACTACTTCA CGCTGTTTCT GACACCCATG
ATGTTCCTGA GCGGCATCTT TTTCCCGCTG GAGCAATTGC CTGTGGTGGT GCGCACGATA
TCGAGCTGGC TGCCGCTGAC CAACGCCGTC GAACTGGTGC GCCCCCTGTT CATGGACCAG
TGGCCGACGC ATGCGTTGCG TCATGTGCTG GTGCTGGCGG TGTACACGGT GGGAGGCTTC
TGGATCGCGC TGGCGCTGAC GCGCAAGCGG TTCCGGGGTT AG
|
|---|
| Protein sequence | MSTQTNTPVH QSVWRAPELS MRWWPVFLRN LLVWRKLAIP SLVGNIAEPL MWLVAFGYGM
GALVGKVSVD GTPVPYILFL ASGSICMSAM QAASFEALYS AFSRMHVQKT WDGIMNAPVN
LDDIVLAEML WAAFKALFTV TAILGVMLAL GISYSPKLLV AWPVLLGVGI TFSCIALIFN
ALAKGYDFFT YYFTLFLTPM MFLSGIFFPL EQLPVVVRTI SSWLPLTNAV ELVRPLFMDQ
WPTHALRHVL VLAVYTVGGF WIALALTRKR FRG
|
|---|
| |