| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3548 |
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| Symbol | |
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| ID | 3961140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3945242 |
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| End bp | 3948265 |
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| Gene Length | 3024 bp |
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| Protein Length | 1007 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637918364 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_524784 |
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| Protein GI | 89902313 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.508984 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAAAA CTGACCCTAT CCCTGACTTG CCCAAGGCTG TCGCAGGCAC GCCGGAGGGT
CTGACCGAGT TCAGGCGACA GGAGGCCTTG CTCAAAACCG GGGCCTTGCA GAACGCGATT
CTCAATAGCG CCAATTTTTC GAGTATTGCC ACCGATGAAC GGGGCGTTAT TCAGATTTTC
AATATTGGCG CCGAGCGCAT GCTGGGCTAT GCCGCCGCCG ATGTCCTGAA CAAGATCACG
CCCGCCGATA TCTCCGATCC GCAGGAATTG ATCTTGCGTG CCACCGAACT GAGCGCTGAG
CTTGAAACCG CCATTGCGCC GGGTTTCGAG GCCCTGGTGT TCAAAGCCTC GCGCGGTATT
GAAGACATTT ACGAGCTGAC CTACATCCGC AAAGACGGCA GCCGTTTTCC GGCCATCGTG
TCGGTCACCG CCTTGCGCAA TGCGCGCGGC ACCGTCATCG GTTACCTCCT GATCGGCACC
GACAACACCG CGCGCAAGCA GGTTGAAGCA GAGCGTCAGC ACCTGCTGAA GGAGCAGGAG
TGGACCAATC AGCAACTGCA TCAGGCCAAC CTGACTTTGC GGGAGAGCGA GGAAAAATTC
GCCGTGACGC TGCATTCCAT TGGGGATGCC GTGATTGCCA CCGACGCCGC TGCGCGCGTG
ACGCTGCTCA ATCCCCTGGC CGAGCGGCTC ACCGGCTGGA CACAAGCGCA GGCCAGCGGT
CGCCCGGTGG ACGAGATTTT CACAATCATC AACAAGGAAA CCCGGCTCAG CGCCACCGTT
CCCGTGGCGG AAACCCTGGC GCACGGCACG ATTCAGGGCC TGGCCAATCA CACGGTTGTG
ATTGCACGCG ATGGCAGCGA GTGCGATATT GCCGACAGTT GCGCACCGAT TCGCGACCGC
GACGGACAGG TGATCGGTGC CGTGCTCGTG TTTCGTGACG TCACCGAGGA ATATGCGGCC
CAGCAGGCCC TGCGCGACAG CACGGCCCTG ATCCAGACCA TTCTCAATAC CGTGGCGGAT
GGCATCATCA CCATTTATGC CCGCGGCGGC ATGATCAAGA CCGTGAATCC GGCCGCTGAG
CGCATGTTTG GCTATAGCGG GATCGAGCTG GTCGGGCAGA ACTTCAGCCT GCTGATTCCC
GAATTGGACC AGGATCAGCG CAATGGCTCA CTTGAGTACT ACAGTGCCAG TGACGAGGCG
CGTGCGGCCG GCTTGGGGCG CGAGGTGCTG GGCCGGCGCC AGGATGGCAG TGTTTTCCCG
ATGGAGATGG CCGTCAGCGA GATGTGGTTG GGCGGCGAGC GCTATTTCAC CGGCATTTTG
CGCGATACCA CCGCGCGCAA ACAGGCCGAA GAAGCGCTGC TTCAGGCGGG GGCCTTGCAG
AGCGCGATTT TCAACAGCGC CAATTTTTCC AGCATTGCCA CTGACGCCAA GGGCGTCATT
CAGATTTTCA ACGTCGGCGC CGAGCGCATG CTGGGTTACA CGGCGGCAGA GGTGATGAAC
AAGGTCACCC CGGCCGACAT TTCCGATTCG AAAGAAGTGA TTGCGCGGGC CAAGGCACTC
AGTCTCGAAC TCGGGACCCA GATTGAGCCG GGCTTCGAAG CGCTGGTGTT CAAGGCCTCG
CGCGGCATTG AGGACATCTA CGAGCTGACC TACATCCGCA AAGACGGCAG CCGCTTCCCG
GCGGTGGTGT CGGTCACGGC GCTGCGCGAC GCGCAGGGCG TCATCATTGG TTACCTGTTG
ATCGGTACCG ACAACACGGC GCGCAAGCGC GTCGAAGCCG AGCGGGCGGT GCTCGATCGG
GCGCTGCGGG ACAAGAATGT CGAACTCGAG AGCGCCCGGC AAGCCGCCGA CAAGGCCAAT
CTCGCCAAAT CAGAGTTTCT GTCGAGCATG AGCCACGAGT TGCGCTCTCC GCTCAATGCG
ATCCTGGGCT TTGCGCAACT GATGGAGTCG GGTGTGCCGC CGCCCACGGC CACGCAAAAG
GCCAGCATCG ACCAGATTCT TCATGGCGGC TGGTATCTGC TGGAGTTGAT CAACGAGATT
CTCGATCTGG CCTTGATCGA GTCCGGCAAG CTGTCGCTGT CGATGGAGCC GATCGCGCTG
CCGGACGTGT TGCTTGACTG TCAAGCCATG ATCGAACCGC AGGCACAAAA GAGCGACATT
CGCATCAGCT TTCCGCAGTT CAACGCCCCT TGCTTTGTGA ATGCCGACCG GACGCGTGTC
AAGCAGGTGA TCGTGAACCT GATGTCCAAC GCCATCAAGT ACAACCGCGT GGGCGGTACG
GTCGAAGTGA CGTGCAAGAA GGTCGCCGCG CAACGCCTGC GGATCAGTGT GCGCGATTCG
GGCGAAGGAC TCTCGGCAGA GAAAGTGACC CAACTGTTTC AGCCGTTCAA TCGGCTCGGG
CAAGAGGTTG GTTCCGAAGA GGGTACCGGC ATCGGCCTGG TGGTGAGCAA GCGGCTGGTC
GAATTGATGG GGGGCGAAAT TGGCGCGCAA AGTATCGTCG GGACCGGCAG CGTGTTCTGG
TTTGAGTTGA ATTTGGTGGC GGCACCGCAA TTTGCCGCCG ATTCCGATGC CCCGCTGGTG
CCGGCGCAGC CGCCCACCGC GCCTGGCGCC GCGCTGCGCA CGCTGCTGTA CGTGGAAGAC
AACCGGGCCA ACATGGAGTT GGTCAAGCAG CTTATTGCGC GACGTCCGGA TATGCGCCTG
TTGAGTGCCA CGGATGGCAT GCAAGGTATT ACGCTGGCGC GCATTCATCT GCCCAAAGTG
ATTCTGATGG ACATCAATCT GCCGGGCATC AGCGGCCTTC AGGCGCTGAA AATCCTGCGT
GAAGACCCTG CAACCCGGCA CATTCCGGTG GTGGCCATCA GTGCCAATGC GATGCCTCGC
GACATTGAGA AAGGCCTGCA GGCCGGGTTC TTGCGCTACC TGACCAAGCC GATCAAAGTC
AACGAGTTCA TGGAAGTGCT GGATATGGCG CTGGAAACGG CGCGGACCGG ATTGGACAAC
GCCGCAATGG AAGAATCCAT GTGA
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| Protein sequence | MLKTDPIPDL PKAVAGTPEG LTEFRRQEAL LKTGALQNAI LNSANFSSIA TDERGVIQIF
NIGAERMLGY AAADVLNKIT PADISDPQEL ILRATELSAE LETAIAPGFE ALVFKASRGI
EDIYELTYIR KDGSRFPAIV SVTALRNARG TVIGYLLIGT DNTARKQVEA ERQHLLKEQE
WTNQQLHQAN LTLRESEEKF AVTLHSIGDA VIATDAAARV TLLNPLAERL TGWTQAQASG
RPVDEIFTII NKETRLSATV PVAETLAHGT IQGLANHTVV IARDGSECDI ADSCAPIRDR
DGQVIGAVLV FRDVTEEYAA QQALRDSTAL IQTILNTVAD GIITIYARGG MIKTVNPAAE
RMFGYSGIEL VGQNFSLLIP ELDQDQRNGS LEYYSASDEA RAAGLGREVL GRRQDGSVFP
MEMAVSEMWL GGERYFTGIL RDTTARKQAE EALLQAGALQ SAIFNSANFS SIATDAKGVI
QIFNVGAERM LGYTAAEVMN KVTPADISDS KEVIARAKAL SLELGTQIEP GFEALVFKAS
RGIEDIYELT YIRKDGSRFP AVVSVTALRD AQGVIIGYLL IGTDNTARKR VEAERAVLDR
ALRDKNVELE SARQAADKAN LAKSEFLSSM SHELRSPLNA ILGFAQLMES GVPPPTATQK
ASIDQILHGG WYLLELINEI LDLALIESGK LSLSMEPIAL PDVLLDCQAM IEPQAQKSDI
RISFPQFNAP CFVNADRTRV KQVIVNLMSN AIKYNRVGGT VEVTCKKVAA QRLRISVRDS
GEGLSAEKVT QLFQPFNRLG QEVGSEEGTG IGLVVSKRLV ELMGGEIGAQ SIVGTGSVFW
FELNLVAAPQ FAADSDAPLV PAQPPTAPGA ALRTLLYVED NRANMELVKQ LIARRPDMRL
LSATDGMQGI TLARIHLPKV ILMDINLPGI SGLQALKILR EDPATRHIPV VAISANAMPR
DIEKGLQAGF LRYLTKPIKV NEFMEVLDMA LETARTGLDN AAMEESM
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