Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3548 |
Symbol | |
ID | 3961140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 3945242 |
End bp | 3948265 |
Gene Length | 3024 bp |
Protein Length | 1007 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637918364 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_524784 |
Protein GI | 89902313 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0784] FOG: CheY-like receiver |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.508984 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTAAAAA CTGACCCTAT CCCTGACTTG CCCAAGGCTG TCGCAGGCAC GCCGGAGGGT CTGACCGAGT TCAGGCGACA GGAGGCCTTG CTCAAAACCG GGGCCTTGCA GAACGCGATT CTCAATAGCG CCAATTTTTC GAGTATTGCC ACCGATGAAC GGGGCGTTAT TCAGATTTTC AATATTGGCG CCGAGCGCAT GCTGGGCTAT GCCGCCGCCG ATGTCCTGAA CAAGATCACG CCCGCCGATA TCTCCGATCC GCAGGAATTG ATCTTGCGTG CCACCGAACT GAGCGCTGAG CTTGAAACCG CCATTGCGCC GGGTTTCGAG GCCCTGGTGT TCAAAGCCTC GCGCGGTATT GAAGACATTT ACGAGCTGAC CTACATCCGC AAAGACGGCA GCCGTTTTCC GGCCATCGTG TCGGTCACCG CCTTGCGCAA TGCGCGCGGC ACCGTCATCG GTTACCTCCT GATCGGCACC GACAACACCG CGCGCAAGCA GGTTGAAGCA GAGCGTCAGC ACCTGCTGAA GGAGCAGGAG TGGACCAATC AGCAACTGCA TCAGGCCAAC CTGACTTTGC GGGAGAGCGA GGAAAAATTC GCCGTGACGC TGCATTCCAT TGGGGATGCC GTGATTGCCA CCGACGCCGC TGCGCGCGTG ACGCTGCTCA ATCCCCTGGC CGAGCGGCTC ACCGGCTGGA CACAAGCGCA GGCCAGCGGT CGCCCGGTGG ACGAGATTTT CACAATCATC AACAAGGAAA CCCGGCTCAG CGCCACCGTT CCCGTGGCGG AAACCCTGGC GCACGGCACG ATTCAGGGCC TGGCCAATCA CACGGTTGTG ATTGCACGCG ATGGCAGCGA GTGCGATATT GCCGACAGTT GCGCACCGAT TCGCGACCGC GACGGACAGG TGATCGGTGC CGTGCTCGTG TTTCGTGACG TCACCGAGGA ATATGCGGCC CAGCAGGCCC TGCGCGACAG CACGGCCCTG ATCCAGACCA TTCTCAATAC CGTGGCGGAT GGCATCATCA CCATTTATGC CCGCGGCGGC ATGATCAAGA CCGTGAATCC GGCCGCTGAG CGCATGTTTG GCTATAGCGG GATCGAGCTG GTCGGGCAGA ACTTCAGCCT GCTGATTCCC GAATTGGACC AGGATCAGCG CAATGGCTCA CTTGAGTACT ACAGTGCCAG TGACGAGGCG CGTGCGGCCG GCTTGGGGCG CGAGGTGCTG GGCCGGCGCC AGGATGGCAG TGTTTTCCCG ATGGAGATGG CCGTCAGCGA GATGTGGTTG GGCGGCGAGC GCTATTTCAC CGGCATTTTG CGCGATACCA CCGCGCGCAA ACAGGCCGAA GAAGCGCTGC TTCAGGCGGG GGCCTTGCAG AGCGCGATTT TCAACAGCGC CAATTTTTCC AGCATTGCCA CTGACGCCAA GGGCGTCATT CAGATTTTCA ACGTCGGCGC CGAGCGCATG CTGGGTTACA CGGCGGCAGA GGTGATGAAC AAGGTCACCC CGGCCGACAT TTCCGATTCG AAAGAAGTGA TTGCGCGGGC CAAGGCACTC AGTCTCGAAC TCGGGACCCA GATTGAGCCG GGCTTCGAAG CGCTGGTGTT CAAGGCCTCG CGCGGCATTG AGGACATCTA CGAGCTGACC TACATCCGCA AAGACGGCAG CCGCTTCCCG GCGGTGGTGT CGGTCACGGC GCTGCGCGAC GCGCAGGGCG TCATCATTGG TTACCTGTTG ATCGGTACCG ACAACACGGC GCGCAAGCGC GTCGAAGCCG AGCGGGCGGT GCTCGATCGG GCGCTGCGGG ACAAGAATGT CGAACTCGAG AGCGCCCGGC AAGCCGCCGA CAAGGCCAAT CTCGCCAAAT CAGAGTTTCT GTCGAGCATG AGCCACGAGT TGCGCTCTCC GCTCAATGCG ATCCTGGGCT TTGCGCAACT GATGGAGTCG GGTGTGCCGC CGCCCACGGC CACGCAAAAG GCCAGCATCG ACCAGATTCT TCATGGCGGC TGGTATCTGC TGGAGTTGAT CAACGAGATT CTCGATCTGG CCTTGATCGA GTCCGGCAAG CTGTCGCTGT CGATGGAGCC GATCGCGCTG CCGGACGTGT TGCTTGACTG TCAAGCCATG ATCGAACCGC AGGCACAAAA GAGCGACATT CGCATCAGCT TTCCGCAGTT CAACGCCCCT TGCTTTGTGA ATGCCGACCG GACGCGTGTC AAGCAGGTGA TCGTGAACCT GATGTCCAAC GCCATCAAGT ACAACCGCGT GGGCGGTACG GTCGAAGTGA CGTGCAAGAA GGTCGCCGCG CAACGCCTGC GGATCAGTGT GCGCGATTCG GGCGAAGGAC TCTCGGCAGA GAAAGTGACC CAACTGTTTC AGCCGTTCAA TCGGCTCGGG CAAGAGGTTG GTTCCGAAGA GGGTACCGGC ATCGGCCTGG TGGTGAGCAA GCGGCTGGTC GAATTGATGG GGGGCGAAAT TGGCGCGCAA AGTATCGTCG GGACCGGCAG CGTGTTCTGG TTTGAGTTGA ATTTGGTGGC GGCACCGCAA TTTGCCGCCG ATTCCGATGC CCCGCTGGTG CCGGCGCAGC CGCCCACCGC GCCTGGCGCC GCGCTGCGCA CGCTGCTGTA CGTGGAAGAC AACCGGGCCA ACATGGAGTT GGTCAAGCAG CTTATTGCGC GACGTCCGGA TATGCGCCTG TTGAGTGCCA CGGATGGCAT GCAAGGTATT ACGCTGGCGC GCATTCATCT GCCCAAAGTG ATTCTGATGG ACATCAATCT GCCGGGCATC AGCGGCCTTC AGGCGCTGAA AATCCTGCGT GAAGACCCTG CAACCCGGCA CATTCCGGTG GTGGCCATCA GTGCCAATGC GATGCCTCGC GACATTGAGA AAGGCCTGCA GGCCGGGTTC TTGCGCTACC TGACCAAGCC GATCAAAGTC AACGAGTTCA TGGAAGTGCT GGATATGGCG CTGGAAACGG CGCGGACCGG ATTGGACAAC GCCGCAATGG AAGAATCCAT GTGA
|
Protein sequence | MLKTDPIPDL PKAVAGTPEG LTEFRRQEAL LKTGALQNAI LNSANFSSIA TDERGVIQIF NIGAERMLGY AAADVLNKIT PADISDPQEL ILRATELSAE LETAIAPGFE ALVFKASRGI EDIYELTYIR KDGSRFPAIV SVTALRNARG TVIGYLLIGT DNTARKQVEA ERQHLLKEQE WTNQQLHQAN LTLRESEEKF AVTLHSIGDA VIATDAAARV TLLNPLAERL TGWTQAQASG RPVDEIFTII NKETRLSATV PVAETLAHGT IQGLANHTVV IARDGSECDI ADSCAPIRDR DGQVIGAVLV FRDVTEEYAA QQALRDSTAL IQTILNTVAD GIITIYARGG MIKTVNPAAE RMFGYSGIEL VGQNFSLLIP ELDQDQRNGS LEYYSASDEA RAAGLGREVL GRRQDGSVFP MEMAVSEMWL GGERYFTGIL RDTTARKQAE EALLQAGALQ SAIFNSANFS SIATDAKGVI QIFNVGAERM LGYTAAEVMN KVTPADISDS KEVIARAKAL SLELGTQIEP GFEALVFKAS RGIEDIYELT YIRKDGSRFP AVVSVTALRD AQGVIIGYLL IGTDNTARKR VEAERAVLDR ALRDKNVELE SARQAADKAN LAKSEFLSSM SHELRSPLNA ILGFAQLMES GVPPPTATQK ASIDQILHGG WYLLELINEI LDLALIESGK LSLSMEPIAL PDVLLDCQAM IEPQAQKSDI RISFPQFNAP CFVNADRTRV KQVIVNLMSN AIKYNRVGGT VEVTCKKVAA QRLRISVRDS GEGLSAEKVT QLFQPFNRLG QEVGSEEGTG IGLVVSKRLV ELMGGEIGAQ SIVGTGSVFW FELNLVAAPQ FAADSDAPLV PAQPPTAPGA ALRTLLYVED NRANMELVKQ LIARRPDMRL LSATDGMQGI TLARIHLPKV ILMDINLPGI SGLQALKILR EDPATRHIPV VAISANAMPR DIEKGLQAGF LRYLTKPIKV NEFMEVLDMA LETARTGLDN AAMEESM
|
| |