Gene Rfer_3486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3486 
Symbol 
ID3963205 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3877681 
End bp3878520 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content63% 
IMG OID637918303 
ProductHpcH/HpaI aldolase 
Protein accessionYP_524723 
Protein GI89902252 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2301] Citrate lyase beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTCCA TGAATGTCGC GCAGCCCCTC ACCTACCTGT TTGTGCCGGG CAACCGGCCC 
GAGCGTTTTG CCAAGGCCCT GGCCAGCGGC GCGGATCGGG TCATTCTTGA CCTGGAAGAT
GCGGTGGCAC CCGCTGATAG GGCCCAAGCG CGTGGGGCCA TCGCAGACTG GGTCGGGACC
TTGACCCTGC AAGACTGCGC GCGTTTGCTG GTACGTATCA ACGACGTGAC AAGCCCCTGC
CATGTTGATG ATGTTTTCTG GCTGCAGTCC TCGCCAATCA ACCATATCAT GCTATCAAAA
TGCGAGTCTC CTGCACAAGT GGCACAGGTC TTGGCTCACA TGCCACCCGG CTCCAGCGTG
TTGCCGCTGA TCGAGACCGT GCGTGGCGTG CTGGCCGCCA ACGCTATCGC ACAGGCCAAG
CAGGTAGAAC GGCTGGCCTT TGGTTCGCTG GACTACCTGC TCGATCTGGA TCTGCCCGGC
CCCGGCTTTG CGCTGGATGC GGCAGCCCTT GCCATTGCCA TGGCATCTCG CGCCGCGGAC
CTGCCCCCAC CGGTGGCCGG GGTCACACCC GAGCTGGACG CGGGCCAGGT GCAGCGTGAT
CTGGTCCACG CCCGCGCCCT GGGTTTTGGG GCCAAGATGT GTATCCACCC GACCCAGGTG
GCCGTGGTGC GCGAGGCCTT CACGCCCGAC GCGCAAGCGC TCGCCTGGGC CCAGCGCGTC
ATCACCCAAT GGCGGCAGTC CAACGGGGCA GGCGCAATCC AGGTCGACGG GAAGATGGTC
GACAAACCGG TGCTGTTACG CGCCGAGCGC ATTCTGGCCT TCTCAAACAA ATTTATTTAA
 
Protein sequence
MNSMNVAQPL TYLFVPGNRP ERFAKALASG ADRVILDLED AVAPADRAQA RGAIADWVGT 
LTLQDCARLL VRINDVTSPC HVDDVFWLQS SPINHIMLSK CESPAQVAQV LAHMPPGSSV
LPLIETVRGV LAANAIAQAK QVERLAFGSL DYLLDLDLPG PGFALDAAAL AIAMASRAAD
LPPPVAGVTP ELDAGQVQRD LVHARALGFG AKMCIHPTQV AVVREAFTPD AQALAWAQRV
ITQWRQSNGA GAIQVDGKMV DKPVLLRAER ILAFSNKFI