| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3483 |
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| Symbol | |
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| ID | 3962663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3874290 |
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| End bp | 3875573 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637918300 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_524720 |
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| Protein GI | 89902249 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.871243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACTG CTGTCATCCT CTTTCTGCTG ATCGCGCTCA TGCTAACCGG CATGCCGATC
TCTATTTCGC TTGGACTTAC CGTCCTTTCG TTTCTGTACC TGTTCACCCA TGTGCCGATT
GAGTCCGTCG CACTCAAGCT GTTCACCGGC ATCGAGAAGT TCGAGATCAT GGCGATTCCG
TTCTTCATCC TGGCGGGCAA CTTCCTGACC CACGGCGGCG TGGCCCGGCG CATGATCCAT
TTTGCGACCT CCATGGTCGG CCATTTCTAC GGTGGCCTGG GACTCTCCGG TGTGGTGGCC
TGCGCCCTGT TTGCTGCAAT ATCAGGCTCG TCACCCGCTA CGGTTGTCGC CATCGGTTCG
ATTTTGTTGC CGGCCATGGT CAAGGCGGGC TACCCCATGA AATTTGGTGC CGGTGTGGTG
ACCACGGCCG GCGGGCTGGG CATTCTGATT CCGCCGTCGA TTGCGATGAT CATCTACGCG
GTGGCCACCA ATTCGTCGAT TGGCGCGCTG TTCATGGCCG GTGTGATTCC CGGCCTGCTG
CTGGCCGTGT TGCTGGGCGT GACCACCTGG TATGTGGCCC GCAAAAACAA TTACCCACGC
CAGCGCAAGG CCAGCTGGGC CGAGCGTTGG AAAGCCCTGC GTGAAGCCAT CTGGGGCGTG
CTGTTGGTGG TTATCGTGAT GGGTGGAATC TACTCCGGTG TGTTCACGCC CACAGAGGCT
GCTGCGGTAG CGGCGGTCTA CGCCTTTGTC ATTGCAATCT TTGTCTACAA GGACATGCAA
CTTAAAGACG TGCCCAAGGT CTTGGTTTCC TCGGCCAATA TGAGCGCCAT GCTGCTCTAC
ATCATCACCA ATGCGGCTCT GTTCTCTTTT TTGATGTCTT ACCAGCATGT GCCCGAAGAA
ATGGCGGGCT GGATGTTGTC GCAGGGTTTG GGTCAGGTCG GATTCCTGTT GATGGCCAAC
ATCTTGCTGC TGGCGGCGGG CAACTTCATG GAGCCTTCCT CCATCATCCT GATCCTGGCG
CCCATCCTCT TTCCCATTGC CATCAAGCTG GGTATTGACC CCATCCACTT CGGCATCATC
ATGACGGTGA ATATGGAGAT CGGCATGTGC CACCCGCCGG TTGGCCTGAA CCTGTACGTG
GCCTCGGGCA TCACCAAGAT GGGCATCACC GAACTCACGG TGGCGGTCTG GCCCTGGCTG
CTGACGATGC TGGGCTTCCT GGTGCTGGTG ACCTACTGGG CCCCGCTGTC CATCTGGCTG
CCAAAAGCCC TCGGAATGAT GTAA
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| Protein sequence | MSTAVILFLL IALMLTGMPI SISLGLTVLS FLYLFTHVPI ESVALKLFTG IEKFEIMAIP
FFILAGNFLT HGGVARRMIH FATSMVGHFY GGLGLSGVVA CALFAAISGS SPATVVAIGS
ILLPAMVKAG YPMKFGAGVV TTAGGLGILI PPSIAMIIYA VATNSSIGAL FMAGVIPGLL
LAVLLGVTTW YVARKNNYPR QRKASWAERW KALREAIWGV LLVVIVMGGI YSGVFTPTEA
AAVAAVYAFV IAIFVYKDMQ LKDVPKVLVS SANMSAMLLY IITNAALFSF LMSYQHVPEE
MAGWMLSQGL GQVGFLLMAN ILLLAAGNFM EPSSIILILA PILFPIAIKL GIDPIHFGII
MTVNMEIGMC HPPVGLNLYV ASGITKMGIT ELTVAVWPWL LTMLGFLVLV TYWAPLSIWL
PKALGMM
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