| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3481 |
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| Symbol | |
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| ID | 3962661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3872509 |
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| End bp | 3873540 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637918298 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_524718 |
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| Protein GI | 89902247 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0875389 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCAA ATACCACCCA ACGTGTTGTT ACAAGAGCGA TCAAAACGCT GACCGGCCTC
TTCACATGCG CCGTACTTTC GATGCCAATG GCGGCGTTGG CGCAAGCCCC CATCATCATC
AAATTTTCAC ATGTCGCTGC CATTGACACA CCAAAGGGCC AAGCAGCTGA ATACTTCAAA
AAAATCGTCG AGGAGCGCAC CAAAGGTCAA GTCAAGGTCG AGGTGTTTGC CAACAGCACC
CTGTTTAAGG ACAAAGAGGA GCTTGAAGCG CTGCAAATCG GCGCGGTGCA GATGCTGGCC
CCGGTGCCGG GCAAGTTTGG CCCGCTTGGT GTCAAGGAAT TTGAGGTGTT CGATTTGCCC
TATATCTTCA AGGACATCGA TGCGGTGCAC CGTTTTGCCC GCGGCCCGGG CGGTGCCAGT
CTGTTGAAAA GGCTCGAATC GCGCGGTGTC ACAGGCTTGG CCTATTGGGA CAACGGCTTT
CGGGTCATGA GCGCCAACAA ACCGATCCAC GTCCCCAGCG ACATGAAGGG GCTGAAGATG
CGCATCAACT CCAGCAAGGT CAATGCATCC ATCATGAAGT CGGTCGGTGC GCAGCCGCAA
AGTCTGGCGT TTTCCGAGGT CTATCAGGCG CTGCAAACCG GTGTGGTCGA TGGCACCGAA
GGCCCGCTGT CCAACCTGTA CACACAAAAG CAATATGAAG TGCAGAAACA TGTGACTTTG
AGCTACCACA CCATCAGCAA CTATGTGGTG GTGACCAACA AGAAGTTCTG GGACGGCCTG
CCAGCCCCCA TTCGCAGCAC ACTCGAAACC GCCATCAAAG ATGCCACAGT CTTCAATGAC
AGCGTGGCAG AAAAAGATGA GGCGGCATCG CTTGCCGCCA TCAAGGCCTC AGGCAAGTCC
ACGGTGTACG CACCGAGTGC CGCCGAACGG GACGCATGGG CCAAAGCCAT GGCCCCGGTG
CATGCCGAAA TGGCAGACCG GGTCGGAGGC AAAACCTTCA TCGACACGGT ACGCGCCGCC
TCGGCGAACT GA
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| Protein sequence | MTPNTTQRVV TRAIKTLTGL FTCAVLSMPM AALAQAPIII KFSHVAAIDT PKGQAAEYFK
KIVEERTKGQ VKVEVFANST LFKDKEELEA LQIGAVQMLA PVPGKFGPLG VKEFEVFDLP
YIFKDIDAVH RFARGPGGAS LLKRLESRGV TGLAYWDNGF RVMSANKPIH VPSDMKGLKM
RINSSKVNAS IMKSVGAQPQ SLAFSEVYQA LQTGVVDGTE GPLSNLYTQK QYEVQKHVTL
SYHTISNYVV VTNKKFWDGL PAPIRSTLET AIKDATVFND SVAEKDEAAS LAAIKASGKS
TVYAPSAAER DAWAKAMAPV HAEMADRVGG KTFIDTVRAA SAN
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