| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3475 |
|---|
| Symbol | |
|---|
| ID | 3962655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3866249 |
|---|
| End bp | 3867964 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637918293 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_524713 |
|---|
| Protein GI | 89902242 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.100102 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCG AAATCACGAT CGAACGAATC ATTCATCCGC ATATCCTCAC CTGCACGCCC
GATACCCTCT TGTCCGATGC AGCGCAACGC ATGGTGGAAA CGCGTTGTAG TTCGATTCTG
GTGGCCGTGG ACGGGGCCAT CGTCGGCATC TGGTCGGAGC AAGACGCGCT GGCATTGGAT
ATAACCACCC CGCAGGCATT CCGTTGTCCC ATCGCGCAAC ACATGACATC CCCGGTGAAA
ACCATCAATG TCAAAACCAG CCTCGGCGAG GCTGCCCTGC GTTTCCGGGA GGAAAAGGTG
CGCCATTTCC TGGCAGTGAA CGATGACGGA AAACATAAGG GCATTGTCAG CCAGACCGAT
ATCGTGATCA ACCAAGGAAT CGAATACTAC ATTTCCTTGC GCGAAGTGCA ATCGGTTCTG
AATCGCCAGT ATCCGATCAT CCCGAGCGCG GCACCTTTGG GCGAGGCTGT GAGAAACATG
CACAGCGGCC GCTTCGATGC CCTCATCACG CAATACCCGG ACGGTGATTA CGGCATCCTC
ACCGAGCGCG ACGTGGTGCG CCTGATCAGC GGCGACAAGC CGATCGCCAT CGTCGGCGAG
CTTGCCAGCC GGCCGCTTAT TTGCGTTCCC GGCGCTACCA GCCTCTATCA AGCGCGCAAC
CTGTTTATAG ACAAGCACAT TCGCCACCTC GGCGTCACCG GCAGCGACGG CAAGCTGTTG
GGGCTGGTGA CGTTCGCCGA ACTGCTGGCG AGCATCGAGC ACGACTATAT TCGTGAGTTA
CGCGAAACAC TCAAGAAACG CGAGCGCAGT CTGGTGATTT CCAAGCAGCA TCAGCGCCTG
GCCGCCAAAG TGTTCGAGAG TACGTTCGAG GGCATCATGA TCACCAACGC CGAAAGCGTG
ATCGAATCGG TCAACCCGGC TTTTACCCAG ATCACCGGCT TCATGGCGCA TGAAGTGATC
GGCAAGACCC CGGCCATCCT TTCTTCTGGC AAGCACCAGG AAATTTTTTA CCGCAAGATG
CGCGAAGATA TAGCCGCCAC CGGCCATTGG CAGGGAGAAA TCTGGAACCG GCGTCGCACC
GGAGAAACCT ATCCGGAATG GCTCACGATC AACGCCGTCA GTAACGATGA CGGCGAGGTC
ACCCATTATG TCGGCGTTTT TTCCGACATC ACCACACGCA AGGCGGCGGA AGAACAAGTG
CTTTTTCTCG CCCACCACGA TGGCCTTACC GGCCTGCCCA ACCGCGCCTT GTTCGCCGAC
AGGCTGCACC AGGCTATCGT TCACGCCCAC CGCGACCGGG CCAAGGTGGC GGTGATGTTC
CTTGATCTCG ACAACTTCAA GCAGACCAAC GATACCCTGG GACATCACAT TGGCGACCAA
CTGCTGCAAA TGGTCGCGCA ACGCCTGACC AACTGCATGC GAGAGGGCGA CACCGTTGCA
CGCCTGGGTG GCGACGAATT CACCGTGGTT CTCGAATCAA TCACCAACAC GGGTGACATC
GCATACCTCT CGCAAAAAAT CATCGATACC GTGTCCCATC CACTCCTGCT CGATGGACAT
GAAATCGCCG TGACCTGCAG TATCGGTGTC AGCGTCTATC CCGACGACAG TGAAGAGTCC
GATGACTTGA TCAAGTATGC CGACACGGCG ATGTACCGGG CCAAGGAAGG TGGGCGCAAC
AATTTCCGGT TTTTCATCGC ACCGGGAAAG AAATAG
|
|---|
| Protein sequence | MPAEITIERI IHPHILTCTP DTLLSDAAQR MVETRCSSIL VAVDGAIVGI WSEQDALALD
ITTPQAFRCP IAQHMTSPVK TINVKTSLGE AALRFREEKV RHFLAVNDDG KHKGIVSQTD
IVINQGIEYY ISLREVQSVL NRQYPIIPSA APLGEAVRNM HSGRFDALIT QYPDGDYGIL
TERDVVRLIS GDKPIAIVGE LASRPLICVP GATSLYQARN LFIDKHIRHL GVTGSDGKLL
GLVTFAELLA SIEHDYIREL RETLKKRERS LVISKQHQRL AAKVFESTFE GIMITNAESV
IESVNPAFTQ ITGFMAHEVI GKTPAILSSG KHQEIFYRKM REDIAATGHW QGEIWNRRRT
GETYPEWLTI NAVSNDDGEV THYVGVFSDI TTRKAAEEQV LFLAHHDGLT GLPNRALFAD
RLHQAIVHAH RDRAKVAVMF LDLDNFKQTN DTLGHHIGDQ LLQMVAQRLT NCMREGDTVA
RLGGDEFTVV LESITNTGDI AYLSQKIIDT VSHPLLLDGH EIAVTCSIGV SVYPDDSEES
DDLIKYADTA MYRAKEGGRN NFRFFIAPGK K
|
|---|
| |