| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3471 |
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| Symbol | |
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| ID | 3962651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3861582 |
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| End bp | 3863438 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637918289 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_524709 |
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| Protein GI | 89902238 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGCCAAC CACTACGTAA AAGACCTGCG CCGTCCTTCG GTCTGTGCTT GTCTGCCACT
CGATGCACGC TCATGCGTTG CATGCTCGTG TTCTGCGCCA TTTTTGGGCT CAGCACATCG
GTGGCGGCAT TGTCGGCACC CGCTCCGATT CTTCTGGATG AATCAAATCC GCTGGTACAG
GCTTGGCCGG CGGTGACGCT GCTCTCCGAC CCGCAAAAGA AGCTGGGCAT CAAGGAAGTC
ATGGAGGCAA GGGACCGGTT CACCACACCA GAAACCGCCT ATGGCACGCT GGGATTGCGC
AAGGATGCCG TGTGGCTTCT GGTCCCGATC TCAGTGTCCA GCCAAAGCAA TGGCCTTTGG
GTGTTGGATA TCGATTACCC CGTGCTCAAC CGTATCGACG TCTACCTTAC CCATGACAAA
ACCCTCATGG AACAAGCCAG GCTGGGCAGC CTGCAACCCC AAGACCAGCG ACCCATTCGC
AGTCGCTCGC ATTCTTTTGG CTTGAAGCTG AAAGCGGGCG CCAACTACGA TTTGTACCTG
CGCATCGAAA GCAAGGGCGC CCTGATATTG CCCATCACGC TGAGCAAGCC CTCGGAATTT
CATGCCAATG CGCTGGGGGA ACAAATGCTG CAAGGCCTGC TCACCGGCCT AGCCCTGTGC
CTGCTGGTGT ACAGCCTGGC GCAATGGCTT ACCCTGGGTG AGCCTCTGTA CGTCAAGTAC
GCCATCCTCA TATTTGGAAG CCTGCTGTTT TCAATGCTTC AATTTGGCGT CGGAGCCCAA
TATGTGTGGC GCGGCAATAC GTGGATGGAA CTCCATACCG CCGGTTTGGC ATCGCTGATC
GCCGCCACCG GCTCCTTCCT GTTTATCGAA CAAGCCCTGG AGGGCCCCGA CGTCCACCCA
TGGATCAGTC GGCTCATGAA AGCGGGTGCC GGTTTTACCG TTTTCTTTGC CTTGTGTTTC
TCCTTTGACT TGATCGACAT CTATATCGTC ACGGCCGTCA TCAGCACGCT GGGTCTGGCG
CCAGCCCTGC TGGGTTTGCC GGGCGCCATT TCACGGGCAC GTCGCGGCGA CAGTGTTGGC
ATCTATTTTT TGTTGGCGTG GGCGGCCTAT TTTGTGACGA CAGCGGTCAT GGTCGAAGTG
ATCAAGGGGC GCGTCGGCGT CAACTTCTGG ACCCTGCACT CCTTCCAGTT TGGCGCCACC
TTCGACATGT TGGTATTCAT GCGGGTGCTG GGCTTGCGAA CCAAAGCCTT GCACAAGGCG
GTAGAACATG CCAGGCGTGA ACGGGACAGC CTGCATTCGC TGGCACATAC GGACCCGCTG
ACCGGACTGC CCAATCGCCG CAGTCTGAAT GCTTCGATGG CGGACGCCAT CAATCACGCC
GGACCGGAAA ATGTTGTCGC TGTGTATATG ATGGACCTGG ACGGGTTCAA ACAAATCAAC
GACCAGTACG GTCATGACGT TGGCGATGAA CTGCTGATCG CCGTCGCGGC GCGCCTGCGG
GCCAATGTGC GTCACAGCGA CCTTATCGCG CGCTTGGGTG GCGACGAATT TGTCGTGATA
TCCAGCGGTT TGCACAGTGT GCAACAAGCC AGAGACCGTG CCGACAAGCT TCTTGAGGCG
TTCAACGACC CCTTTGCCTT GTCAGAGAAA ATCTGCCGCA TCGGTCTGAC CATAGGCTAT
GCGCTTGCGC CCCAGGATGG GAGCGACGCC ATCAGTCTTT TCAAGCGCGC CGATGCCGCC
ATGTATGCCG GCAAGAATGA CGGCAAGCAT TGTGCACGTC GCGGCGATGG CACAGTACCC
GCCTCAAGTC ATACGGACTG GCAACCACTC GATGGCAGCA AGGTCACGGA GTTCTAA
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| Protein sequence | MCQPLRKRPA PSFGLCLSAT RCTLMRCMLV FCAIFGLSTS VAALSAPAPI LLDESNPLVQ
AWPAVTLLSD PQKKLGIKEV MEARDRFTTP ETAYGTLGLR KDAVWLLVPI SVSSQSNGLW
VLDIDYPVLN RIDVYLTHDK TLMEQARLGS LQPQDQRPIR SRSHSFGLKL KAGANYDLYL
RIESKGALIL PITLSKPSEF HANALGEQML QGLLTGLALC LLVYSLAQWL TLGEPLYVKY
AILIFGSLLF SMLQFGVGAQ YVWRGNTWME LHTAGLASLI AATGSFLFIE QALEGPDVHP
WISRLMKAGA GFTVFFALCF SFDLIDIYIV TAVISTLGLA PALLGLPGAI SRARRGDSVG
IYFLLAWAAY FVTTAVMVEV IKGRVGVNFW TLHSFQFGAT FDMLVFMRVL GLRTKALHKA
VEHARRERDS LHSLAHTDPL TGLPNRRSLN ASMADAINHA GPENVVAVYM MDLDGFKQIN
DQYGHDVGDE LLIAVAARLR ANVRHSDLIA RLGGDEFVVI SSGLHSVQQA RDRADKLLEA
FNDPFALSEK ICRIGLTIGY ALAPQDGSDA ISLFKRADAA MYAGKNDGKH CARRGDGTVP
ASSHTDWQPL DGSKVTEF
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