| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3444 |
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| Symbol | dapF |
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| ID | 3960504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3833652 |
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| End bp | 3834527 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637918264 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_524684 |
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| Protein GI | 89902213 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAATCC CCTTTACCAA AATGCAAGGT GCCGGCAACG ATTTTGTGGT GCTTGATGAG
ACTCAAGGCC GCTTTGGTTT GAGCACCGCG CACTACCGCT TGCTGGCGGA TCGCCACTTT
GGCGTCGGTG CCGACCAGAT TTTGACGGTG CGCCCTTCTC CGGCGCCAGG CATTGATTTT
GAGTACCTCA TTCACAACGC CGATGGCGCC GAGGTCGAGC AGTGCGGCAA CGGGGCGCGC
TGCTTTGCGC GCTTCGTGCG GGACCAGGGC CTGACAGCCA AGGACGCGAT CCGGGTGCAG
ACCCGAGGCG GCGTGATTGA GCCGCAACTT AATCCCGATG GCCGCGTCAC GGTGAACATG
GGCGCGCCGG TGTTTGAACT GGCCGAGATC CCGTTTGATG CCACCGGTCT GCAGCCGCAA
ACTTCGGGTT TATGGAAAAA ATGGCCTCTA GCCCTCGTGG ATTCTGGGCA TGCAACTACT
GTTTATGTAG CAGTTGTGTC GATGGGCAAT CCGCATGCGG TGCAGGTCGT GGACGATGTC
GACACGGCGC CGGTGCGGTT GCAAGGCCCT TTGATTGAAC ACCATGCCAG TTTCCCGAAG
CGGGTCAACG CCGGTTTCAT GCAGATCGTG GACCGCAGCC ACATCCGGCT GCGCGTTTAC
GAGCGCGGCA CCGGCGAAAC CCTGGCCTGC GGCTCCGGCG CCTGCGCGGC GGTGGTGGCC
GGCATCCGGC TCGGGCTGCT CGACGACACG GTGCATGTCC AGACCCACGG CGGCACATTG
ACCATTTCCT GGGCGGGCGC CGCAGCGCCG GTGCTGATGA CCGGGCCCGC CACCCCAGTT
TTTCACGGTG AAATCAACCT ACCCGACAAC CTATGA
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| Protein sequence | MRIPFTKMQG AGNDFVVLDE TQGRFGLSTA HYRLLADRHF GVGADQILTV RPSPAPGIDF
EYLIHNADGA EVEQCGNGAR CFARFVRDQG LTAKDAIRVQ TRGGVIEPQL NPDGRVTVNM
GAPVFELAEI PFDATGLQPQ TSGLWKKWPL ALVDSGHATT VYVAVVSMGN PHAVQVVDDV
DTAPVRLQGP LIEHHASFPK RVNAGFMQIV DRSHIRLRVY ERGTGETLAC GSGACAAVVA
GIRLGLLDDT VHVQTHGGTL TISWAGAAAP VLMTGPATPV FHGEINLPDN L
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