| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3442 |
|---|
| Symbol | |
|---|
| ID | 3960502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3831381 |
|---|
| End bp | 3832394 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637918262 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_524682 |
|---|
| Protein GI | 89902211 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4973] Site-specific recombinase XerC |
|---|
| TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCG CGCCCTCAGG GGCCAGCACA GCACACGAAG TGACCGCCGT GGGAACGGAT
TTGGTTGAGC GCTACCTGGA GCACGTGCGG GTTGAAAAAC GCCTGGCGCA ACGCACGGTC
GAGTTGTATG CGCTGGACCT GCAGAAGCTG TCCCAGCAGG CCGCGCAGGC AGGGGTCGAA
CTGCTTCAGG TGCAAAACAG CCACATCCGG CGCTGGGTGG CCCAAATGAA TGCCGGCGGG
CGCAGTGGCC GCGGCATTGC CCTGATTCTG TCGGGCTGGC GCGGCTTCTA CGTCTGGTTG
GGGCGCGAAG GCCTGATCAG CAGCAACCCG GTGCAGGATG TGCGTGCGCC CAAGGCGGGC
AAGCCGCTGC CCAAAGCCCT GAGTGTGGAC CAGGCCGTCC AACTGGCCAG CTTTGCGAGC
GGCAGCAACG ACCCGTGGCT GGAGGCGCGC GACGCCGCCA TGGTGGAGCT GCTGTATGGC
GCAGGCCTGC GGGTGGGCGA GTTGACCGGA CTGGACACGG TGGCCAGTAG CAGCGCACGC
GGCTGGATCG ATTTGCAGGG TGGTGAAGCC CATGTGTTGG GCAAGGGCGG CAAACGGCGC
AGCGTGCCGG TGGGTGCCAA GGCGGTGCTT GCCATCACCC ACTGGCTGGC GCTACGCGAT
CAGGCGCTGG CGCAAGCCAA GCCGGGTCTG CAGGGGCCGG GCGGCAACGC CCAGGCCGCG
CTGTTTATGG GACGCAATGG CACCCGCTTG AGCGCCCAAT CGATCTGGCA GCGCCTGCGC
CAACGCAGCC TGCAGGCGGG CTTGACGACA CCGGTGCATC CCCACATGCT GCGCCACTCG
TTTGCCAGCC ACCTGTTGCA GTCCAGCAGC GATTTGCGCG CGGTGCAGGA GTTGCTGGGC
CACGCCAGCA TCACCACGAC CCAGGCCTAC ACCCGGCTCG ACTTCCAGCA TTTGGCCAAG
GCGTACGATG CGGCTCATCC GCGGGCGAAA ATCAAGGGGG CGACCCCAAA ATAG
|
|---|
| Protein sequence | MTRAPSGAST AHEVTAVGTD LVERYLEHVR VEKRLAQRTV ELYALDLQKL SQQAAQAGVE
LLQVQNSHIR RWVAQMNAGG RSGRGIALIL SGWRGFYVWL GREGLISSNP VQDVRAPKAG
KPLPKALSVD QAVQLASFAS GSNDPWLEAR DAAMVELLYG AGLRVGELTG LDTVASSSAR
GWIDLQGGEA HVLGKGGKRR SVPVGAKAVL AITHWLALRD QALAQAKPGL QGPGGNAQAA
LFMGRNGTRL SAQSIWQRLR QRSLQAGLTT PVHPHMLRHS FASHLLQSSS DLRAVQELLG
HASITTTQAY TRLDFQHLAK AYDAAHPRAK IKGATPK
|
|---|
| |