| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3427 |
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| Symbol | murD |
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| ID | 3963353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3813434 |
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| End bp | 3814954 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637918247 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_524667 |
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| Protein GI | 89902196 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.313138 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCGC TGCAAGACCA ACACGTGCTG ATTCTGGGCC TGGGCGCCTC GGGCCTGGCC
ATGGCGCGCT GGTGTGCGCG CTGCGGCGCG CGGGTGACGG TGGCTGACAC GCGCAGCGCG
CCGCCACAGC TGGCCGCCTT GCAACGCGAG TTGCCCGCGG CCCAGTTCAT CAGCGGTGCC
TTTGACGCAG CGCTTGTCGT GGGCACCGAT GTGCGCGCGG TGTTCAAGAG TCCAGGTTTG
TCACCGCTTG ATGTCGCTAC AGTTATAGAA GCTGCTAACA CAATTGGCAT CAGGGCTACA
GGCGAATTAG GCTTGTTTTC CCAAGCACTG GCTGACTTGA AGGCAACGCA GAATTACACG
CCAAAAGTGC TGGCCGTCAC AGGCACCAAC GGCAAGACCA CCGTCACCGC ACTGACCGGA
CTGCTGGTGG AGCGCGGTGG CAAAAGCGTC GCGGTGGCCG GCAATATCGG ACCGACCTTG
CTTGACACGC TGATCCAGCA TCTGGCGGCC GGCACACTGC CCGAGGTCTG GGTCATCGAG
TTGTCGAGCT TTCAACTGGA GGGCGAAACA GGCTTCGAGC CCAGCGCCGC TGCGGTGCTC
AACATCACGC AAGACCATCT GGACTGGCAT GGCAGCATGG CGGCTTACGT GGCCGCCAAG
GCCCATGTCT TTGGCGCGAC CGGCCTGATG ATTTTGAACC GGGAAGACCC CCAGGTCATG
GCGATGCTGC CAGAGCCGGT GCGGGTCAAG CTGCAACGCC CCCAGCTACG CGCCCATGTC
ACCTTCGGCG CTGACCTGCC GCGACGTCCG GGCGACTTCG GACTGGAGCA GGTCAACGGC
ATGCTGTGGC TGGTGCGCGC GCTGGAGGCC GACGAAACGC TCAAGAATCG CAAGGGTGAA
ACGCCCGAGC TGTTTCTGCA GCGCCTGATG CCGGCCGACG CCCTGCGCAT TCGCGGCCGC
CACAACGCAG TCAACGCGTT GGCGGCGCTG GCATTGGCTC AAGCCGCCGG CTGTGCGCTG
GGCCCGATGC TCTACGGCCT GCGCGACTAC CGGGGCGAGC CGCACCGGGT GGCGCCGATT
GGCATCTTCA ATGAAGTGGA ATTCTTCGAC GACAGCAAAG GCACCAATGT AGGTGCGACG
GTGGCGGCGC TCGCCGGCCT GGGGTCTGAG CGCAAGGTGA TCGTCATCCT GGGCGGCGAG
GGCAAGGGGC AGGACTTCGC GCCGCTGGTC GATCCGGTGT CGCGCTACGC CCGCGCCGTG
GTGCTGATCG GGCGCGACGC TCCGCTCTTG CGCGCTGCGC TGCAAGCCAC CCACGTGCCG
CTGCTGGAGG CCGAGTCCAT GGCGCAGGCA GTCGCGCTGG CCAATGCCCA GGCGCACGCG
GGCGACGCGG TGCTGCTGTC GCCAGCCTGT GCCAGCTTTG ACATGTTTGA CAACTACGAG
CACCGGGCCC AGGTGTTCGC GCAAGCGGTG GGCGAGCTCG CCAGCGCCGC CGGGGCGGCG
TGGGAAGGTG CTGCGCCATG A
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| Protein sequence | MNALQDQHVL ILGLGASGLA MARWCARCGA RVTVADTRSA PPQLAALQRE LPAAQFISGA
FDAALVVGTD VRAVFKSPGL SPLDVATVIE AANTIGIRAT GELGLFSQAL ADLKATQNYT
PKVLAVTGTN GKTTVTALTG LLVERGGKSV AVAGNIGPTL LDTLIQHLAA GTLPEVWVIE
LSSFQLEGET GFEPSAAAVL NITQDHLDWH GSMAAYVAAK AHVFGATGLM ILNREDPQVM
AMLPEPVRVK LQRPQLRAHV TFGADLPRRP GDFGLEQVNG MLWLVRALEA DETLKNRKGE
TPELFLQRLM PADALRIRGR HNAVNALAAL ALAQAAGCAL GPMLYGLRDY RGEPHRVAPI
GIFNEVEFFD DSKGTNVGAT VAALAGLGSE RKVIVILGGE GKGQDFAPLV DPVSRYARAV
VLIGRDAPLL RAALQATHVP LLEAESMAQA VALANAQAHA GDAVLLSPAC ASFDMFDNYE
HRAQVFAQAV GELASAAGAA WEGAAP
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