| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3419 |
|---|
| Symbol | |
|---|
| ID | 3963345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3803628 |
|---|
| End bp | 3804410 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637918239 |
|---|
| Product | monofunctional biosynthetic peptidoglycan transglycosylase |
|---|
| Protein accession | YP_524659 |
|---|
| Protein GI | 89902188 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02070] monofunctional biosynthetic peptidoglycan transglycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0214813 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCTG TGTTGCGTTG GCTCGGTCTG GTGGTGGCGG CGCTGCTGGC GCTGCAACTC
TATTTTGTCG TTCGTATTGC CGCCATGACG CTGGTGGACC CGCAGTCCAC CGCCTTTGAG
CGCTCACAGG TGTGGCGCCA GTGGCACGAC AAAGGCAGTT GGCGCTGGCG TCAGCAGTGG
GTGGCTTACC CGCAGATCGC CGACAACCTC AAGCGTGCGG TGATCGCCGC TGAGGACGAC
AGTTTCATCT ACCACGACGG CGTGGACTGG GACGCGCTGG AGAAGGCCTG GCAAAAAAAT
GCCAAGGCCG AGGCGCAAGC GGCCAAGCAA CAGGCCGCCC AAGCCGCCAA AGCGCCAGCG
ACCCAGAAAA AAGCCGCAGC GCCGACGACA AGCAAGCCGC TGGCTCGGGC CCCCAAAGTC
GTCGGTGGCT CCACCATCAC GCAACAACTG GCAAAAAATC TGTTCCTGTC GGGTGAGCGC
ACCCTGCTGC GCAAGGGCCA GGAGTTTGTC CTGGCCATGC TGCTGGAGGC CTTGCTCAGC
AAGCAGCGCA TTCTGGAGAT TTACCTCAAC AACGTGGAGT GGGGCGAGGG CGTCTTTGGC
GCCGAGGCCG CAGCGCAGCA CTACTTTCGC AAACCGGCGT CCAAATTGAG CGCCTATGAA
GCCGCGCGCC TGGCCGTGAT GCTGCCGCGC CCCAAGTATT TTGAAAAATT GCCCAACTCC
AGCTACATCG CCGGGCGTGC CAACGTGATT GTCAACCGCC TGAACAACGC TGAACTGCCC
TGA
|
|---|
| Protein sequence | MKPVLRWLGL VVAALLALQL YFVVRIAAMT LVDPQSTAFE RSQVWRQWHD KGSWRWRQQW
VAYPQIADNL KRAVIAAEDD SFIYHDGVDW DALEKAWQKN AKAEAQAAKQ QAAQAAKAPA
TQKKAAAPTT SKPLARAPKV VGGSTITQQL AKNLFLSGER TLLRKGQEFV LAMLLEALLS
KQRILEIYLN NVEWGEGVFG AEAAAQHYFR KPASKLSAYE AARLAVMLPR PKYFEKLPNS
SYIAGRANVI VNRLNNAELP
|
|---|
| |