| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3402 |
|---|
| Symbol | ureC |
|---|
| ID | 3962186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3787288 |
|---|
| End bp | 3789033 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637918222 |
|---|
| Product | urease subunit alpha |
|---|
| Protein accession | YP_524642 |
|---|
| Protein GI | 89902171 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0804] Urea amidohydrolase (urease) alpha subunit |
|---|
| TIGRFAM ID | [TIGR01792] urease, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.889558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCA TCGGACGGCG CGCTTACGCT GAAATGTTTG GCCCCACGGT GGGCGACCGG
GTGCGCCTGG CCGACACCAA CCTGATCATT GAAGTCGAAG ACGACTACAC CCTGCGCGCG
GGCGGCTACG GCGAAGAAGT CAAGTTTGGC GGCGGCAAAA CCATCCGCGA TGGCATGGCG
CAGTCGCAGC GCAGCCGGGC CGAGGGCGCG GTTGATACCG TCATGACAAA TGCCCTGATC
ATTGACCACT GGGGCATTGT CAAGGCCGAC ATTGGCCTCA AAGACAGCCG CATCGTGGCC
ATCGGCAAAG CCGGCAACCC AGACACCCAG CCGGGCGTGG ACATCATCAT CGGCCCGGGC
ACCGAAGTCA TCAGCTGCGA AGGCAGCATC GTCACCGCCG GTGGTTTTGA CAGCCACATC
CACTTCATTT GCCCGCAACT GATTGAAGAG GCTTTGAGTA GCGGAATCAC CACCATGACC
GGCGGCGGCA CGGGCCCGGC CACCGGCACC TTTGCCACCA CCTGCACACC CGGCTCGTGG
CACATTGAGC GCATGCTGCA GGCCGCTGAT GCGTTTGCCA TGAACCTGGG CTTCATGGGC
AAGGGCAACG CCAGCCTGCC TGCCGCGCTG CACGAGCAAA TCAACGCGGG CGCCTTGGGC
CTCAAATTAC ACGAAGACTG GGGCACCACG CCAGCGGCGA TCGACAACTG CCTGAACGTG
GCCGAACTCA CCGACACACA GGTGGCGATC CACACCGACA CGCTCAACGA ATCGGGCTTT
GTGGAAGACA CACTGGCCGC TTTCAAAGGT CGCAGCATCC ACACCTTTCA CACCGAAGGG
GCTGGCGGCG GCCACGCGCC TGACATCATG AAACTGGTGG GCGAGCCCAA CGTGCTGCCG
TCTTCCACCA ACCCGACACG GCCGTACACC GTCAACACGC TGGATGAACA CGTGGACATG
CTGATGGTCT GCCACCACCT GGACGCCGCC ATAGCCGAAG ACCTGGCCTT TGCCGAGAGC
CGCATCCGCA AGGAAACCAT CGCCGCCGAA GACATCCTGC ACGACCTGGG CGCCATCAGC
ATCATGAGCA GCGACAGCCA GGCCATGGGC CGCGTCGGTG AGGTCATCAT CCGTACCTGG
CAGACCGCGC ACAAGATGAA GGCGCAGCGC GGCTGGCTGG CACCGCCGCC TGAGCGCAGC
GAGCCGGTGG AAAAATTGCA GCGCAACGAC AACTACCGGG TCAAGCGCTA CCTGGCCAAG
TACACGATCA ACCCGGCACT GACGCACGGC ATGGCGCATG AAGTGGGCTC CATCGAGCTT
GGCAAATGGG CCGATCTGGT GGTCTGGAGG CCCGCCTTCT TTGGCGTCAA ACCGTCCTTG
ATTGTCAAAG GCGGCTCAAT CGCCATGGCG GCCATGGGCG ACCCCAATGC CAGCATCCCG
ACGCCGCAAC CGGTGCATTA CCGGCCCATG TTTGGCGCGT TTGGCGGCGC CTTGGCGCGC
GGCTCGCTCA CCTTTGTATC GCAAGCCGGG TTGAACGCCG GTATTGGCGC GCGCTATGGG
CTGAGCAAGA CTTTAAGCGC CGTCAAAAAC ATCCGGGGCA TTCGCAAAGA GCACATGGTG
CATAACCACT ACCTGCCCAA GATGGAGATC GATGCCCAGA CCTACAGCGT GCGCGCCGAC
GGCGAGTTGC TCACCTGCGA GCCGGCGGTG AGTTTGCCGA TGACGCAGCG CTACTTTTTG
TTCTAA
|
|---|
| Protein sequence | MATIGRRAYA EMFGPTVGDR VRLADTNLII EVEDDYTLRA GGYGEEVKFG GGKTIRDGMA
QSQRSRAEGA VDTVMTNALI IDHWGIVKAD IGLKDSRIVA IGKAGNPDTQ PGVDIIIGPG
TEVISCEGSI VTAGGFDSHI HFICPQLIEE ALSSGITTMT GGGTGPATGT FATTCTPGSW
HIERMLQAAD AFAMNLGFMG KGNASLPAAL HEQINAGALG LKLHEDWGTT PAAIDNCLNV
AELTDTQVAI HTDTLNESGF VEDTLAAFKG RSIHTFHTEG AGGGHAPDIM KLVGEPNVLP
SSTNPTRPYT VNTLDEHVDM LMVCHHLDAA IAEDLAFAES RIRKETIAAE DILHDLGAIS
IMSSDSQAMG RVGEVIIRTW QTAHKMKAQR GWLAPPPERS EPVEKLQRND NYRVKRYLAK
YTINPALTHG MAHEVGSIEL GKWADLVVWR PAFFGVKPSL IVKGGSIAMA AMGDPNASIP
TPQPVHYRPM FGAFGGALAR GSLTFVSQAG LNAGIGARYG LSKTLSAVKN IRGIRKEHMV
HNHYLPKMEI DAQTYSVRAD GELLTCEPAV SLPMTQRYFL F
|
|---|
| |