Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3398 |
Symbol | |
ID | 3962182 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 3782252 |
End bp | 3785860 |
Gene Length | 3609 bp |
Protein Length | 1202 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637918218 |
Product | periplasmic sensor hybrid histidine kinase |
Protein accession | YP_524638 |
Protein GI | 89902167 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.613847 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCGTGCC ATGGCGGCTG CCATGCCCCT GCCGTGGCAT GGAAACTGCA CCACAGCGGT GTGACCTCAG ACACCCACCC CATCCCGCAC GCGGCCGCGT CGACACGCGC GCGGCCCGAG GCGCTGCAGC GCATCACGCT GGTGCGGCGC GACTACAACG GCTGGGTGGC GAGCGAGACG CTGGAAGACT ACGCCTTGCG TTTCACGCCG CAACGCTTTC GCAAGTGGTC CGAGTGGCGC GTTGCGAACA CCGCTTTTGG CGCCGCCTCG TTCCTGATTC TGGAGGCTGT CGGCGCCACG CTGCTGGTGC AATACGGTTT TACCAACGCG TTTTGGGCCA TTCTGGCCAC CGGCCTCATC ATTTTTCTGG CCGGCCTGCC GATCAGCATT TACGCCGCCC GCTACGGGGT GGACATGGAC CTGCTCACGC GCGGCGCCGG TTTTGGCTAC ATCGGCTCCA CGCTCACCTC GCTCATCTAC GCCTCGTTCA CCTTCATCTT TTTTGCGCTG GAGGCGGCCG TCATGGCCTA TGCGCTGGAA CTGGCGCTGG GCATTCCGCC CAGCTGGGGC TACCTGATTT GTGCGCTGGC GGTGATCCCG CTGGTGACCC ATGGTGTTTC CACCATCAGC CGCCTGCAGG TCTGGACCCA GCCGGTGTGG CTGCTGATGC TGGTGGTGCC CTTTGTTTAT GTGCTGATGC GCGACCCTGG TGCTTTCTCG GGCGTGGTGC ACTACATCGG GGAAAGAGGA ACGGGTCCGG GGTTCAGTCT GCCCTTGTTT GGTGCGGCGC TCACGGTCGG CATCGCCTTG ATGACGCAAA TGGGCGAACA GGCTGACTAC CTGCGTTTCA TGCCTGCCAA GACGCCTGCC AATCGCCAAC GCTGGTGGTG CAGTGTGTTG GTCGGCGGGC CGGGCTGGGT GATTTTGGGT GTGCTCAAGA TGCTGGGCGG GGCGCTCTTG GCTTATCTGG CGATCAGCCA CGCGGTGCCG GTGGACCGCG CGGTGGACCC GAACCAGATG TACCTGGCGG CGTATGAATA TGTGTTTCCC AATTACGGTT GGGCGGTGGC GGCCACGGCG CTGTTCGTGG TGATCTCGCA GCTCAAGATC AATGTCACCA ACGCCTATGC CGGTTCGCTG GCCTGGTCCA ATTTTTTCTC GCGCCTGACG CACAGCCACC CGGGCCGGGT GGTGTGGGTG GTGTTCAACA CCCTGATTGC GTTCATGCTG ATGGAGATGA ATGTGTTTCA GGCGCTGGGT GATGTGCTGG GCCTGTACTC CAACATCGCC ATCGCCTGGA TGATGGCGGT GGTGGCCGAC CTGGTCATCA ACAAACCGCT GGGCCTGTCA CCGCCGGGCA TCGAGTTCAA ACGCGCGCAT CTGTATGACA TCAACCCGGT GGGCGTCGGT TCCATGGCGC TCGCGTCCCT CTTGTCAGTC ACGGCGCACC TGGGGCTGTT CGGCCCCATG GCGCAGGCCT TCTCGGCGCT GATTGCGCTG GGCACGGCGT TCGTGGCCGC GCCGCTGATT GCATGGGCCA CCCAGGGCCG CTACTACATG GCACGACAGA GCGCGGCGCC AGCGGGCGGG GCGGTGGGTG AGGGGGCCTG CAAGCGCTAC CAGGTGCAGC GCTGCGTGAT CTGCGAACGC CAGTACGAAG GCCCCGACAT GGCGCATTGC CCGGCCTACC AAGGCGCCAT CTGCTCGCTG TGTTGCACGC TGGACGCGCG CTGCGGCGAC CTGTGCAAAC CCCACGCTTC CCTGTCCAGC CAATGGTCCG CCACCTTGCG CTGGCTGCTG CCGCGGCGCA GCTGGTCGTA CCTGGACAAC GGCCTGGGCT ACTTTCTGCT GCTCATGGGG GTGACCGTGC CGCTGCTGGC CAGTGTGTTC GGTCTGCTCT ATCACCAGGA GTTGCGCGCC TTGACGCTGA GTGTGACTGA CATCGTGCAG TTGCAGGCGC CGCATGCCGC TTTGCGTTCG GGGTTCTTCA AGGCCTATAT GGCGCTGCTG GTGATTGCCG GCCTGGTGGC CTGGTGGGTG GTGCTGGCGC ACAAGAGCCG CCAGGTGGCG CAGGAAGAAT CCAACCGCCA GACCCATTTG CTGATGTGCG AGATCGAGTC GCACCGCCAG ACCGACGAAG CGCTGCAAAC CGCCAGGCGC GTGGCGGAGC AGGCGCGCCA TGCCGCCGAC CAGGCGAACC AGGCCAAGAG CCGCTACATC AGCGCCATCA GCCACGAGCT GCGCACGCCG CTCAACAGCA TCCTGGGCTA TGCGCAGCTG ATGGGCGAGG ACCCGTCCAT CCCGGTGCAC CGCCAGCAGG CCGTCAGCGT CATCAAGCGC GGCGGCGAGC ACCTGCTCTC GCTGATCGAA GGCACACTCG ACATCGCGCA CATCGAGAGT GGCAAGCTCA CGCTCAATCC CCGCCCCATG CACTTCGCCT CCCTGATGCA GGACATCGCC AGCCTGTTTG AGCTCGAAGC GCAGGCCAAG GGCCTGAGCT TTCGTTATGT TGAAGGCGCC GCCCTGCCGG CCGTGGTGCG GGCGGACGAA AAGCGGGTGC GTCAGATATT GATCAATCTG CTGGGCAACG CCATCAAGTT CACCCAGAAA GGGCAGGTCA CGTTTGACAT CCGCTACGCG CGCGAGATGG CCGTGATTGA CATCGAAGAC ACCGGGCCGG GCCTGTCCCC ACAAGAGCTC AATCGCATCT TTGAGCCCTT TACCCGCGCC CATACGCCGG GCGCCACGGC ATCGGGCTCC GGTCTGGGGC TGACCATCGC CAAGATGCTG ACCGACTTGA TGGGTGGTGA ACTCACCGTG ACCAGCACGC CGGGCATGGG CTCGGTGTTT AAAGTGAAAC TGTTTTTGCC CGAGGTGCGC GTGACCTCGG GCGCTGTCGG TGCCCTGTGC TTGTCCGGCT CCTCGGCCGA CATGCCAAGG TCTTTGGCGA ACAAACCACG CCACGGTTAT GCCGGGCCAC GCCGACGCGT GCTGGTGGTG GACAACGAAG AGGCCGACCG CGAGCTGCTC GTCAATCTGC TGCAGCCGCT CGGTTTTGAG CTGCGCACCG CCGCCAGCGG CCATGACTGC CTGGACCTGC TGGCAGCGGG CTATCAGCCC GACGTCATCT TCATGGACCT GGCCATGCCC GGCATTGACG GCTGGGAAAC CATTCGCCGT CTGCGCGCAC TGGGCAGCAC CCAGGCGCAG ATTGCCATCG TGTCGGCCAA TGCTTTTGAC AAGGGGCTGG ACAACGACGT CGACATGCCA AGTGAAGACT TCATCCTCAA GCCGGTGCGC CACTCCGAGC TGCTGGACTG GCTGGCGCTG CGCTTGTCGC TCACCTGGCT GGACAGCGCC GCACCGGTCG CAGAGCCTGC CCCTGCGCCC CTGCCAGTCG CCCTGGTTTA TCCCGAACGG CCGCAGCTCG ATGCCTTGCG CGAGGTGGTG AGCCTGGGTT TTTTTCGCGG CATCATGAAC AAGCTCGACG AAATCGAGGC CAGCCAGACG CAATGCACCG CCTTTGTCAC CGGGATGCGC GGCCTGGCCC GGCAGTTCCA GTTTGAGACC ATGAGTCAGC AACTGAACCA GGTGATCCAT GAAAACTAG
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Protein sequence | MPCHGGCHAP AVAWKLHHSG VTSDTHPIPH AAASTRARPE ALQRITLVRR DYNGWVASET LEDYALRFTP QRFRKWSEWR VANTAFGAAS FLILEAVGAT LLVQYGFTNA FWAILATGLI IFLAGLPISI YAARYGVDMD LLTRGAGFGY IGSTLTSLIY ASFTFIFFAL EAAVMAYALE LALGIPPSWG YLICALAVIP LVTHGVSTIS RLQVWTQPVW LLMLVVPFVY VLMRDPGAFS GVVHYIGERG TGPGFSLPLF GAALTVGIAL MTQMGEQADY LRFMPAKTPA NRQRWWCSVL VGGPGWVILG VLKMLGGALL AYLAISHAVP VDRAVDPNQM YLAAYEYVFP NYGWAVAATA LFVVISQLKI NVTNAYAGSL AWSNFFSRLT HSHPGRVVWV VFNTLIAFML MEMNVFQALG DVLGLYSNIA IAWMMAVVAD LVINKPLGLS PPGIEFKRAH LYDINPVGVG SMALASLLSV TAHLGLFGPM AQAFSALIAL GTAFVAAPLI AWATQGRYYM ARQSAAPAGG AVGEGACKRY QVQRCVICER QYEGPDMAHC PAYQGAICSL CCTLDARCGD LCKPHASLSS QWSATLRWLL PRRSWSYLDN GLGYFLLLMG VTVPLLASVF GLLYHQELRA LTLSVTDIVQ LQAPHAALRS GFFKAYMALL VIAGLVAWWV VLAHKSRQVA QEESNRQTHL LMCEIESHRQ TDEALQTARR VAEQARHAAD QANQAKSRYI SAISHELRTP LNSILGYAQL MGEDPSIPVH RQQAVSVIKR GGEHLLSLIE GTLDIAHIES GKLTLNPRPM HFASLMQDIA SLFELEAQAK GLSFRYVEGA ALPAVVRADE KRVRQILINL LGNAIKFTQK GQVTFDIRYA REMAVIDIED TGPGLSPQEL NRIFEPFTRA HTPGATASGS GLGLTIAKML TDLMGGELTV TSTPGMGSVF KVKLFLPEVR VTSGAVGALC LSGSSADMPR SLANKPRHGY AGPRRRVLVV DNEEADRELL VNLLQPLGFE LRTAASGHDC LDLLAAGYQP DVIFMDLAMP GIDGWETIRR LRALGSTQAQ IAIVSANAFD KGLDNDVDMP SEDFILKPVR HSELLDWLAL RLSLTWLDSA APVAEPAPAP LPVALVYPER PQLDALREVV SLGFFRGIMN KLDEIEASQT QCTAFVTGMR GLARQFQFET MSQQLNQVIH EN
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