Gene Rfer_3395 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3395 
Symbol 
ID3962179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3774743 
End bp3778252 
Gene Length3510 bp 
Protein Length1169 aa 
Translation table11 
GC content61% 
IMG OID637918215 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_524635 
Protein GI89902164 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.856791 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGACGA ATTTTTTACC GAGTCATTCA GGATGGCGCC CTCCCGTCGA ACGGCGCGGT 
ACCTGCCGCT TGTTACTTGC GGTCTGGGTG GTTCTTGCCG GGATTTTGGG CCTTTGCCTG
CCTGGCCCGG TCCAGGCGGC CACCTCGCTC AATGACTGGC GCACACAAGC GGGCCAGACC
CGGGTACTGG CGGAAAATGA CGTGCCTCGC GCCTACACGC AGGCGCAGCG CTTGCAGGCC
AGCCTGCCCG CCGATGCCAC ACCCGTTGAC CGGGCCCGGG TGCTCAATCT GCTGGCCCGT
ATCGAGGTTT ATCTGTCGTT GACCGAAAAG GCGCAAAAGA ACGCTGAAAC CGCCCTGGAA
CTGGCGCAAC GGCAGGGGGA CCGGGTGGGG CAGGCCGAGG CACAGCTCAA CGTGGCGTTG
AACGCCGTCA ACCAGGCCCG GATTGACGCG TCCATTACTG CCACCACCCG CAGCGTGGAA
CTGCTCGAAG ACGTGAACCG GCCTGACTTG CTCGGCGAAG CGCTGCTGAG GATGTCCATG
ATGTACCGCC GCGTCAATGA CTTTGACAAT TCCGTCACCA TGGCCATGCA GGCCATGGAA
ATTGCCAAAC GCACGAAAGA CCCCCTTGCG CTGACCTACG CCCATCAGGG CCTGGCCATT
TCATTCGATC TCAGCGGGCG CTACGCGCAG GCTGGCGAGC ACTACCTGCA GATGCGCGAC
TACGCTCGCA TTGCCCACTC GAAAATTCTG GAAGCACACG CCGTTCACGG TCTTGGCGGG
GTGACGGCGA GCCTTGGCCG TGTTGCTGAA GGCGAACGTT TGACGCGCGA GGCGATTGCC
ATGTTCCGCT CAGTCGGTAG CCCCTTCAGT CTGAGCTACG GGCTGTTTGG CTTTGCGGAC
TTGCTTCGCA AGCAGGGCCG CTACGGCGAA GCCGTGCTGC TGCTGGAGGA AGTGGTCGCG
ATCTATGAAA AATATCCGAA CCCCATCGGT CTCTGGTTTA CGCTGAATGC GCGCAGCACC
AGTCTTCAGG CCTTAAGCCG CAACGCGGCC GCACGGGCCG ATGCCGAGAG GGCTTATGGG
CTCGCCAAAG AAATTGGTTT GCCCGTTTAC CTGAGCGGCA GTGCGCGGCG CATGGCCGAG
ATTGGCACCG TTGACGGTGA CCACCAGCGA GCCTACCAGC TCTTTGTCGA AGCGGCCGAC
CTGGCGGACA AGGTGGCGCG CGAAAAAGCC AGCGCACGCA TGGTGGAACT TGCCGAACGC
TACGCAACCG AGAACAAGCA GCGCGAAATC AACGAATTGA CCCGTCGCAA CGAGCAACAA
TCCGCTGAGC TGCGCCAGCG CGCCCTGCAG GAGCGCTGGC TGTGGACCGT GCTCGGCGGC
AGTGCCCTTG TCTTTGCCGG TAGCGCGTAC TTCCTGCTTC GTCTGCGGCG CTCCAACCGG
ATGCTCGAAG CGCTCAATAC ACAAGTGCAG CGGTCCCAAA ACCAGCTGCA AGCCACGTTT
GATGCGATCC CGGACCCGCT GTTCGTGCTT GGACTCGATG GTCGTTACTA TGACTGCCGT
TCTTCGCGCG CTGACCTATT GGCCGCACCG GCAGAAGATT TGATCGGCAA AACGGTGTCT
GACGTCCTGC CTCCCGAAGC CGCCAGCATT TGTTTGTCGG CGTTGCGCGA GGCGAATGAA
AAGGGCACAT CAACGGGCAA GCAGTTTGAA TTGCAGCTTG CGCATGGCAG GGCCTGGTTT
GAACTGTCCG TTGCCCGCAA GTCGGTGGGC CAGAGGCAAG AGCCGCGTTT TATCGTCCTG
TCCCGAGATA TCACCGAGCG CAAGCAGGCC GAGGAGGCGC TTCGCATCGC CGCCACCGCC
TTCGAGTCCC AGGAGGGCAT GACCGTCACC GATGCACAGG GCGCCGTCCT GAGGATCAAC
CGGGCCTTCA CCGAAATTAC CGGCTACAGC GCCGATGAAG TCGTAGGCCA TAACCCGCGC
CTGCTCCAGT CGGGGCGCCA TGACAAAGCC TTCTATGCCG CGATGTGGGA AAGTATCAGG
CGTACCGGAT CTTGGCAAGG CGAAATCTGG AACCGGCGCA AGAACGGCGA AGCCTATCCG
GAGTTGCTCT CCATCACCGC TGTCAAGGAG AACGGTGGAA TTGTCACCCA CTACGTCGGC
ACCTTCATGG ACATCACCCG GCGCAAGGCA GCGGAGGACG AGATCCGCAA TCTGGCGTTC
TTTGACTTGC AGACCGGCCT GCCCAACCGG CGGCTCCTGC TCGACCGGCT GCAGCAGGCC
TTGGCCGCGA GTGCCCGTCA CCGGCGCCAA GGGGCGCTGC TGCTGATCGA CCTTGACAAT
TTCAAGACCC TCAACGACAC CCTTGGCCAT GACAAGGGCG ATCTGCTGCT GCAGCAAGTC
GCCCAACGGC TGGCAAGCTG TGTGCACGAG GGTGGCACGG TGGCCCGGTT GGGTGGCGAT
GAATTCGTGG TGATGCTCGA GAATCTGAGT GAGCACCTGG AGGCGGCCGC CACCCAGGCT
GAAACCCTGG CCAAAAGAAT TCTGGCCTCG CTCAAGCAGA CCTACTCTCT GGACGGCTAT
GAGTATCAAA GCACGGCCAG CATCGGCATT ACGCTGTTTT CCGAGCAGCA GGAGACCACT
GAGGATCTAC TGAAGCGGGC CGATCTGGCC ATGTACCAGG CCAAGGCGGT AGGTCGCAAC
ACGCTGCGCT TTTTCGACCC GGAAATGCAG GCCGTGGTCA CGTCGCGCGC TGCATTGGAA
GCAGGTTTGC GCAGGGCTGT TACGAGTGAT GAGTTTCTTC TCTACTATCA GGCTCAGGTG
GACGGCCAGG GCCACCTGAC AGGGTGCGAG GCGCTGTTGC GCTGGCAACA TCCTGAACGT
GGCCTGGTAG CGCCTGGCGA ATTCATTGCG CTGGCTGAGG ACACCGGCTT GATCCTGCCG
CTGGGTCGTT GGGTGCTGGA CGCCGCATGC ACCCAATTGG CCCAGTGGGC CACCCGGCCT
GAGATGGCCC ACCTGACGGT TGCGGTCAAC GTCAGCGTCC GCCAGTTCCA TCAGGCGGAT
TTTGTGAACC AGGTGTTGAC GGTTCTTGAC AGCACTGGCA CTAACCCGCA ACGGCTCAAG
CTGGAACTGA CCGAGAGTCT GCTGATCGGT GACGTGGAAG ACGTCATCGC CAAGATGAGC
ATCCTGAAAG AAAAAGGCGT TGGCTTCTCC CTGGACGATT TCGGCACCGG CTATTCCTCG
CTGTCCTATC TGAAACGCCT GCCGCTGGAT CAGCTGAAGA TCGACCAGGG TTTTGTCAGG
AACATTCTCA TCGACCCCAA CGATGCCGCC ATCGCCAGGA TGGTCATCGC GCTGGGCGAC
AGCCTGGGCC TGGCGGTCAT CGCGGAGGGG GTTGAAATCG AGGCGCAGAG GGATTTTCTG
GCCCGTTTGG GCTGCCATGC CTGCCAGGGC TATCTGTTTT GCCGTCCGCT GCCGCTGGAT
CAGTTCGAGG CGTTTGTGAG GCGGGTCTGA
 
Protein sequence
MATNFLPSHS GWRPPVERRG TCRLLLAVWV VLAGILGLCL PGPVQAATSL NDWRTQAGQT 
RVLAENDVPR AYTQAQRLQA SLPADATPVD RARVLNLLAR IEVYLSLTEK AQKNAETALE
LAQRQGDRVG QAEAQLNVAL NAVNQARIDA SITATTRSVE LLEDVNRPDL LGEALLRMSM
MYRRVNDFDN SVTMAMQAME IAKRTKDPLA LTYAHQGLAI SFDLSGRYAQ AGEHYLQMRD
YARIAHSKIL EAHAVHGLGG VTASLGRVAE GERLTREAIA MFRSVGSPFS LSYGLFGFAD
LLRKQGRYGE AVLLLEEVVA IYEKYPNPIG LWFTLNARST SLQALSRNAA ARADAERAYG
LAKEIGLPVY LSGSARRMAE IGTVDGDHQR AYQLFVEAAD LADKVAREKA SARMVELAER
YATENKQREI NELTRRNEQQ SAELRQRALQ ERWLWTVLGG SALVFAGSAY FLLRLRRSNR
MLEALNTQVQ RSQNQLQATF DAIPDPLFVL GLDGRYYDCR SSRADLLAAP AEDLIGKTVS
DVLPPEAASI CLSALREANE KGTSTGKQFE LQLAHGRAWF ELSVARKSVG QRQEPRFIVL
SRDITERKQA EEALRIAATA FESQEGMTVT DAQGAVLRIN RAFTEITGYS ADEVVGHNPR
LLQSGRHDKA FYAAMWESIR RTGSWQGEIW NRRKNGEAYP ELLSITAVKE NGGIVTHYVG
TFMDITRRKA AEDEIRNLAF FDLQTGLPNR RLLLDRLQQA LAASARHRRQ GALLLIDLDN
FKTLNDTLGH DKGDLLLQQV AQRLASCVHE GGTVARLGGD EFVVMLENLS EHLEAAATQA
ETLAKRILAS LKQTYSLDGY EYQSTASIGI TLFSEQQETT EDLLKRADLA MYQAKAVGRN
TLRFFDPEMQ AVVTSRAALE AGLRRAVTSD EFLLYYQAQV DGQGHLTGCE ALLRWQHPER
GLVAPGEFIA LAEDTGLILP LGRWVLDAAC TQLAQWATRP EMAHLTVAVN VSVRQFHQAD
FVNQVLTVLD STGTNPQRLK LELTESLLIG DVEDVIAKMS ILKEKGVGFS LDDFGTGYSS
LSYLKRLPLD QLKIDQGFVR NILIDPNDAA IARMVIALGD SLGLAVIAEG VEIEAQRDFL
ARLGCHACQG YLFCRPLPLD QFEAFVRRV