Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_3395 |
Symbol | |
ID | 3962179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 3774743 |
End bp | 3778252 |
Gene Length | 3510 bp |
Protein Length | 1169 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637918215 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_524635 |
Protein GI | 89902164 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.856791 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGACGA ATTTTTTACC GAGTCATTCA GGATGGCGCC CTCCCGTCGA ACGGCGCGGT ACCTGCCGCT TGTTACTTGC GGTCTGGGTG GTTCTTGCCG GGATTTTGGG CCTTTGCCTG CCTGGCCCGG TCCAGGCGGC CACCTCGCTC AATGACTGGC GCACACAAGC GGGCCAGACC CGGGTACTGG CGGAAAATGA CGTGCCTCGC GCCTACACGC AGGCGCAGCG CTTGCAGGCC AGCCTGCCCG CCGATGCCAC ACCCGTTGAC CGGGCCCGGG TGCTCAATCT GCTGGCCCGT ATCGAGGTTT ATCTGTCGTT GACCGAAAAG GCGCAAAAGA ACGCTGAAAC CGCCCTGGAA CTGGCGCAAC GGCAGGGGGA CCGGGTGGGG CAGGCCGAGG CACAGCTCAA CGTGGCGTTG AACGCCGTCA ACCAGGCCCG GATTGACGCG TCCATTACTG CCACCACCCG CAGCGTGGAA CTGCTCGAAG ACGTGAACCG GCCTGACTTG CTCGGCGAAG CGCTGCTGAG GATGTCCATG ATGTACCGCC GCGTCAATGA CTTTGACAAT TCCGTCACCA TGGCCATGCA GGCCATGGAA ATTGCCAAAC GCACGAAAGA CCCCCTTGCG CTGACCTACG CCCATCAGGG CCTGGCCATT TCATTCGATC TCAGCGGGCG CTACGCGCAG GCTGGCGAGC ACTACCTGCA GATGCGCGAC TACGCTCGCA TTGCCCACTC GAAAATTCTG GAAGCACACG CCGTTCACGG TCTTGGCGGG GTGACGGCGA GCCTTGGCCG TGTTGCTGAA GGCGAACGTT TGACGCGCGA GGCGATTGCC ATGTTCCGCT CAGTCGGTAG CCCCTTCAGT CTGAGCTACG GGCTGTTTGG CTTTGCGGAC TTGCTTCGCA AGCAGGGCCG CTACGGCGAA GCCGTGCTGC TGCTGGAGGA AGTGGTCGCG ATCTATGAAA AATATCCGAA CCCCATCGGT CTCTGGTTTA CGCTGAATGC GCGCAGCACC AGTCTTCAGG CCTTAAGCCG CAACGCGGCC GCACGGGCCG ATGCCGAGAG GGCTTATGGG CTCGCCAAAG AAATTGGTTT GCCCGTTTAC CTGAGCGGCA GTGCGCGGCG CATGGCCGAG ATTGGCACCG TTGACGGTGA CCACCAGCGA GCCTACCAGC TCTTTGTCGA AGCGGCCGAC CTGGCGGACA AGGTGGCGCG CGAAAAAGCC AGCGCACGCA TGGTGGAACT TGCCGAACGC TACGCAACCG AGAACAAGCA GCGCGAAATC AACGAATTGA CCCGTCGCAA CGAGCAACAA TCCGCTGAGC TGCGCCAGCG CGCCCTGCAG GAGCGCTGGC TGTGGACCGT GCTCGGCGGC AGTGCCCTTG TCTTTGCCGG TAGCGCGTAC TTCCTGCTTC GTCTGCGGCG CTCCAACCGG ATGCTCGAAG CGCTCAATAC ACAAGTGCAG CGGTCCCAAA ACCAGCTGCA AGCCACGTTT GATGCGATCC CGGACCCGCT GTTCGTGCTT GGACTCGATG GTCGTTACTA TGACTGCCGT TCTTCGCGCG CTGACCTATT GGCCGCACCG GCAGAAGATT TGATCGGCAA AACGGTGTCT GACGTCCTGC CTCCCGAAGC CGCCAGCATT TGTTTGTCGG CGTTGCGCGA GGCGAATGAA AAGGGCACAT CAACGGGCAA GCAGTTTGAA TTGCAGCTTG CGCATGGCAG GGCCTGGTTT GAACTGTCCG TTGCCCGCAA GTCGGTGGGC CAGAGGCAAG AGCCGCGTTT TATCGTCCTG TCCCGAGATA TCACCGAGCG CAAGCAGGCC GAGGAGGCGC TTCGCATCGC CGCCACCGCC TTCGAGTCCC AGGAGGGCAT GACCGTCACC GATGCACAGG GCGCCGTCCT GAGGATCAAC CGGGCCTTCA CCGAAATTAC CGGCTACAGC GCCGATGAAG TCGTAGGCCA TAACCCGCGC CTGCTCCAGT CGGGGCGCCA TGACAAAGCC TTCTATGCCG CGATGTGGGA AAGTATCAGG CGTACCGGAT CTTGGCAAGG CGAAATCTGG AACCGGCGCA AGAACGGCGA AGCCTATCCG GAGTTGCTCT CCATCACCGC TGTCAAGGAG AACGGTGGAA TTGTCACCCA CTACGTCGGC ACCTTCATGG ACATCACCCG GCGCAAGGCA GCGGAGGACG AGATCCGCAA TCTGGCGTTC TTTGACTTGC AGACCGGCCT GCCCAACCGG CGGCTCCTGC TCGACCGGCT GCAGCAGGCC TTGGCCGCGA GTGCCCGTCA CCGGCGCCAA GGGGCGCTGC TGCTGATCGA CCTTGACAAT TTCAAGACCC TCAACGACAC CCTTGGCCAT GACAAGGGCG ATCTGCTGCT GCAGCAAGTC GCCCAACGGC TGGCAAGCTG TGTGCACGAG GGTGGCACGG TGGCCCGGTT GGGTGGCGAT GAATTCGTGG TGATGCTCGA GAATCTGAGT GAGCACCTGG AGGCGGCCGC CACCCAGGCT GAAACCCTGG CCAAAAGAAT TCTGGCCTCG CTCAAGCAGA CCTACTCTCT GGACGGCTAT GAGTATCAAA GCACGGCCAG CATCGGCATT ACGCTGTTTT CCGAGCAGCA GGAGACCACT GAGGATCTAC TGAAGCGGGC CGATCTGGCC ATGTACCAGG CCAAGGCGGT AGGTCGCAAC ACGCTGCGCT TTTTCGACCC GGAAATGCAG GCCGTGGTCA CGTCGCGCGC TGCATTGGAA GCAGGTTTGC GCAGGGCTGT TACGAGTGAT GAGTTTCTTC TCTACTATCA GGCTCAGGTG GACGGCCAGG GCCACCTGAC AGGGTGCGAG GCGCTGTTGC GCTGGCAACA TCCTGAACGT GGCCTGGTAG CGCCTGGCGA ATTCATTGCG CTGGCTGAGG ACACCGGCTT GATCCTGCCG CTGGGTCGTT GGGTGCTGGA CGCCGCATGC ACCCAATTGG CCCAGTGGGC CACCCGGCCT GAGATGGCCC ACCTGACGGT TGCGGTCAAC GTCAGCGTCC GCCAGTTCCA TCAGGCGGAT TTTGTGAACC AGGTGTTGAC GGTTCTTGAC AGCACTGGCA CTAACCCGCA ACGGCTCAAG CTGGAACTGA CCGAGAGTCT GCTGATCGGT GACGTGGAAG ACGTCATCGC CAAGATGAGC ATCCTGAAAG AAAAAGGCGT TGGCTTCTCC CTGGACGATT TCGGCACCGG CTATTCCTCG CTGTCCTATC TGAAACGCCT GCCGCTGGAT CAGCTGAAGA TCGACCAGGG TTTTGTCAGG AACATTCTCA TCGACCCCAA CGATGCCGCC ATCGCCAGGA TGGTCATCGC GCTGGGCGAC AGCCTGGGCC TGGCGGTCAT CGCGGAGGGG GTTGAAATCG AGGCGCAGAG GGATTTTCTG GCCCGTTTGG GCTGCCATGC CTGCCAGGGC TATCTGTTTT GCCGTCCGCT GCCGCTGGAT CAGTTCGAGG CGTTTGTGAG GCGGGTCTGA
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Protein sequence | MATNFLPSHS GWRPPVERRG TCRLLLAVWV VLAGILGLCL PGPVQAATSL NDWRTQAGQT RVLAENDVPR AYTQAQRLQA SLPADATPVD RARVLNLLAR IEVYLSLTEK AQKNAETALE LAQRQGDRVG QAEAQLNVAL NAVNQARIDA SITATTRSVE LLEDVNRPDL LGEALLRMSM MYRRVNDFDN SVTMAMQAME IAKRTKDPLA LTYAHQGLAI SFDLSGRYAQ AGEHYLQMRD YARIAHSKIL EAHAVHGLGG VTASLGRVAE GERLTREAIA MFRSVGSPFS LSYGLFGFAD LLRKQGRYGE AVLLLEEVVA IYEKYPNPIG LWFTLNARST SLQALSRNAA ARADAERAYG LAKEIGLPVY LSGSARRMAE IGTVDGDHQR AYQLFVEAAD LADKVAREKA SARMVELAER YATENKQREI NELTRRNEQQ SAELRQRALQ ERWLWTVLGG SALVFAGSAY FLLRLRRSNR MLEALNTQVQ RSQNQLQATF DAIPDPLFVL GLDGRYYDCR SSRADLLAAP AEDLIGKTVS DVLPPEAASI CLSALREANE KGTSTGKQFE LQLAHGRAWF ELSVARKSVG QRQEPRFIVL SRDITERKQA EEALRIAATA FESQEGMTVT DAQGAVLRIN RAFTEITGYS ADEVVGHNPR LLQSGRHDKA FYAAMWESIR RTGSWQGEIW NRRKNGEAYP ELLSITAVKE NGGIVTHYVG TFMDITRRKA AEDEIRNLAF FDLQTGLPNR RLLLDRLQQA LAASARHRRQ GALLLIDLDN FKTLNDTLGH DKGDLLLQQV AQRLASCVHE GGTVARLGGD EFVVMLENLS EHLEAAATQA ETLAKRILAS LKQTYSLDGY EYQSTASIGI TLFSEQQETT EDLLKRADLA MYQAKAVGRN TLRFFDPEMQ AVVTSRAALE AGLRRAVTSD EFLLYYQAQV DGQGHLTGCE ALLRWQHPER GLVAPGEFIA LAEDTGLILP LGRWVLDAAC TQLAQWATRP EMAHLTVAVN VSVRQFHQAD FVNQVLTVLD STGTNPQRLK LELTESLLIG DVEDVIAKMS ILKEKGVGFS LDDFGTGYSS LSYLKRLPLD QLKIDQGFVR NILIDPNDAA IARMVIALGD SLGLAVIAEG VEIEAQRDFL ARLGCHACQG YLFCRPLPLD QFEAFVRRV
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