| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3380 |
|---|
| Symbol | |
|---|
| ID | 3960952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3755527 |
|---|
| End bp | 3757107 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637918200 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_524620 |
|---|
| Protein GI | 89902149 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGGCC ATTTGATCCG ATTGACGGCA TGCGCTATAT TTTTAATAGC TTGTAACGCA
CATTCCATAA CGGCTGACGA GGCAAAAGCC ATTGCATCCG GTGAAGCCGA CGCGCGCATC
GAGGTCCTGA ACAAAGCGGT GGCAACGGCG GACGACAAAA CGGCGGCCTT TCTGCAGGCC
CTGTCAGACG ACGCGGTCAA AGTGGCCGCT GACGCAGTGC TCGTCATCAA AGACGGCAAG
GGCTATGACC CGGTGAGCGG TGCTGAAGTG CCTGTGCCCG ACGTGTTTGA GGACGTGATG
AACAACAACC GCATGCGCGG CGAGCTGGAC TCCGCTCTGG CCGCGCTCAA GCTGTTTTCC
AAAGACGAGA AGACCCGCAT CGCCGCCATC AAGCAGTTGC AGAGCGATGC GGACGAAAGC
AAATTGCCGC TGATCGAAAA GGCTTTTGCA GCCGAGCAAA ACGCGCAGAT CAAGGAGCAA
CTTGGGCTGG TGCGTGCGGC AGCCTTGCTC AACAGTGCCG ACAAAGCCAA GCGCCTGGAA
GCCGCCAAGC TGCTGAGCTC CAGCACGCAG GCCAACACCA AAACCGTGTT GCTGGCGCGC
CTGGCGCAAG AGACCGAACC GGATGTCAAG TCGGCCTTGC AGAGCACACT GCGCCAAGTC
GAGGCTTCAT TGGCCTGGGG CGACAGGCTG GGTGCCATCT TCAGCGGCAT CAGCCTGGGC
AGCATCTTGC TGCTGGTGGC GCTCGGCCTG GCGATCACCT ACGGCTTGAT GGGTGTCATC
AACATGGCGC ATGGCGAGCT GATGATGATT GGCGCTTACG CCACCTACGT GGTGCAAGCC
TTGTTTCAAA AATACCTGCC CGGCGCTTTT GACTGGTATC TGTTGGCCTC GGTGCCGGTG
GCCTTTCTGG CCTCGGCGCT GATGGGGGCG GCGCTGGAAC GCAGCGTGAT CCGCTTCTTG
TATGGCCGCC CGCTGGAAAC CCTGCTGGCC ACCTGGGGCA TCAGTTTGAT GTTGCAGCAG
CTGGTGCGCA GCTTTTTCGG CGCGCAAAAC GTGGGGGTGG AAAACCCGTC GTGGATGAGC
GGCGGCGTGC AGGTGCTGGG CAACTTGTCG CTGCCCTTCA ATCGGCTGGT GATCGTCGGC
TTTGCGGTCT TTGTGTTGTT GGCGGTGGCG TGGTTGATCG GCAGAACGCG GCTGGGTCTG
TTCGTGCGCG GCGTGACGCA AAACCGGCCC ATTGCCGCCT GCATGGGCGT GAACACGGCG
CGGATTGACA CCTACGCCTT TGCACTGGGT TCCGGCATTG CCGGCTTGGC CGGTTGTGCG
CTAAGCCAGG TCGGCAATGT GGGGCCGGAC CTGGGGCAAG GCTACATCGT GGACTCGTTC
ATGGTGGTGG TGCTGGGCGG CGTGGGCCAG CTGGCCGGCA CCGTGTATGC CGCCATGGGC
CTGGGGATTT TGAACAAGTT TCTGGAGGGC TGGACCGGCG CCGTGCTGGC CAAGATTGCG
GTGCTGGTGT TCATCATCAT CTTCATCCAG AAACGTCCGC AAGGCATCTT TGCCATGAAG
GGCCGCTCGG CAGAGGCTTG A
|
|---|
| Protein sequence | MLGHLIRLTA CAIFLIACNA HSITADEAKA IASGEADARI EVLNKAVATA DDKTAAFLQA
LSDDAVKVAA DAVLVIKDGK GYDPVSGAEV PVPDVFEDVM NNNRMRGELD SALAALKLFS
KDEKTRIAAI KQLQSDADES KLPLIEKAFA AEQNAQIKEQ LGLVRAAALL NSADKAKRLE
AAKLLSSSTQ ANTKTVLLAR LAQETEPDVK SALQSTLRQV EASLAWGDRL GAIFSGISLG
SILLLVALGL AITYGLMGVI NMAHGELMMI GAYATYVVQA LFQKYLPGAF DWYLLASVPV
AFLASALMGA ALERSVIRFL YGRPLETLLA TWGISLMLQQ LVRSFFGAQN VGVENPSWMS
GGVQVLGNLS LPFNRLVIVG FAVFVLLAVA WLIGRTRLGL FVRGVTQNRP IAACMGVNTA
RIDTYAFALG SGIAGLAGCA LSQVGNVGPD LGQGYIVDSF MVVVLGGVGQ LAGTVYAAMG
LGILNKFLEG WTGAVLAKIA VLVFIIIFIQ KRPQGIFAMK GRSAEA
|
|---|
| |