| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3352 |
|---|
| Symbol | |
|---|
| ID | 3964215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3722736 |
|---|
| End bp | 3724085 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637918172 |
|---|
| Product | acetyl-CoA carboxylase, biotin carboxylase |
|---|
| Protein accession | YP_524592 |
|---|
| Protein GI | 89902121 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0439] Biotin carboxylase |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.610074 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGA AAATCCTGGT TGCCAATCGG GGCGAAATTG CCCTCAGAAT TCAACGTGCC
TGTCGTGAGC TTGGTATCCA GGCGGTCATG GTCTATTCGG AGGCTGATCG CGAGGCCAAG
TACGTCAAGT TGGCCGAAGA AGCCGTCTGC ATCGGACCCG CGCAGTCGGC TCTGAGCTAT
CTGAATATGC CCGCCATCAT TTCGGCCGCT GAAGTGACGG ATGCCGAGGC GATCCATCCC
GGTTACGGTT TTTTGAGCGA AAACGCTGAT TTTGCCGAGC GGGTGGAGAA AAGTGGTTTT
CAGTTTATTG GCCCGACACC CGAATCGATT CGCATGATGG GTGACAAGGT CTCTGCCAAG
CAGGCGATGA TCAAGGCGGG CGTTCCCTGT GTACCAGGTT CGGAAGGCGA GCTGCCCGAT
GATCCGGTGC AAGTTCGCCG TATTGCCAAG GCCGTGGGTT ACCCGGTCAT CATCAAGGCT
GCGGGGGGCG GGGGTGGACG CGGTATGCGC GTGGTCCATA CCGAAGCGGC TTTGCTCAAT
GCTGTCACCA TGACCAAAGC CGAAGCCGGC GCCGCTTTTG GCAACCCGGC GGTGTATCTG
GAGAAGTTTC TCCAGAACCC CAGGCATATT GAAATCCAGA TTCTGGCGGA CAAGTACAGG
AACGCGGTGT ACCTGGGTGA GCGAGATTGC TCGATGCAGC GGCGGCACCA AAAAGTGCTG
GAAGAAGCGC CTGCGCCCGG TATTGCACGC AAGCTGATTG AACGTCTGGG CGATCGCTGC
GTGTCAGCGT GCAAAAAAAT TGGTTATCGC GGGGCCGGCA CTTTCGAGTT TTTGTATGAA
GACGGCGAGT TTTATTTCAT CGAAATGAAT ACCCGCGTGC AGGTGGAGCA CCCGGTCACG
GAAATGATTA CCGGGGTGGA TATTGTCAAG ACCCAGATCA TGGTGGCGGC CGGTGAGAAG
TTGCCGTTCA CGCAACGCCA GATTGAGATT CGTGGACACG CCATTGAATG TCGTGTGAAT
GCTGAAGACC CCTTTAAATT CATTCCTTCA CCTGGTCGAG TCACCATGTG GCACGCACCG
GGCGGGCCAG GGGTGCGGGT GGACTCCCAC ATCTACACCA ATTACTTCGT TCCCTCAAAT
TACGACTCGA TGATTGGCAA GATCATTGTG CACGGCGACA CACGTGAGCA GGCCTTGGCG
CGTATGCGAA CAGCCTTGGG TGAAACGGTG GTGGAGGGCA TCAACACCAA CATTGCGCTG
CACCGTGAGT TGATGGTGGA CGCGAAGTTC ATGTCCGGTG GCACCAACAT CCACTATCTT
GAAGAATGGC TTGCCCAGCA CACACGCTAG
|
|---|
| Protein sequence | MFKKILVANR GEIALRIQRA CRELGIQAVM VYSEADREAK YVKLAEEAVC IGPAQSALSY
LNMPAIISAA EVTDAEAIHP GYGFLSENAD FAERVEKSGF QFIGPTPESI RMMGDKVSAK
QAMIKAGVPC VPGSEGELPD DPVQVRRIAK AVGYPVIIKA AGGGGGRGMR VVHTEAALLN
AVTMTKAEAG AAFGNPAVYL EKFLQNPRHI EIQILADKYR NAVYLGERDC SMQRRHQKVL
EEAPAPGIAR KLIERLGDRC VSACKKIGYR GAGTFEFLYE DGEFYFIEMN TRVQVEHPVT
EMITGVDIVK TQIMVAAGEK LPFTQRQIEI RGHAIECRVN AEDPFKFIPS PGRVTMWHAP
GGPGVRVDSH IYTNYFVPSN YDSMIGKIIV HGDTREQALA RMRTALGETV VEGINTNIAL
HRELMVDAKF MSGGTNIHYL EEWLAQHTR
|
|---|
| |