| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3332 |
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| Symbol | |
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| ID | 3963031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3697798 |
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| End bp | 3699642 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637918152 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_524572 |
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| Protein GI | 89902101 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.449777 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTAGAA AAACCGACAC CATGATGACT ATTTTCCAGC CCACCCGACT TGGCCATGCC
GTTTGGTCAC CAGCAGGTGC CTTGCCCGGT CTGTGTCTGG CGATGGGTGT GACCTTGCTC
GCCGGTTGTG CGGCTGAGCG GCCACTGCGC ACGCCTGATG TGGGCGAGGC CATCCGTGCG
GATCTGGCAG TCGGCGAGGC GGCCAGGCCT GCCAAACCGG TGCTCGTGCC GTCGCGCATC
AGTGACGCGC TGGCCGAACC AGCGCCACCC GCGGTGGCCG CGCGTCCCGA GCCCAAACTG
GATTTGTTGG TGAACAACGC CCCGGCCCGC GAGGTTTTTT TGGCCATCGT GGCCGACACG
CGCTACAGCA TGATGATGCA CCCCGACGTG GCGGGCACTT TGTCGGTGAC GTTGCGCGGT
GTGACGGTGC CGGAGGCACT GGAGGCCATT CGTGACGTGT ATGGTTACGA CTTCAAGATG
GAGGGTCGGC GCATCACGGT CTATGGGCCG ACGCTGCAGA CGCGGATTTT CACCATCAAT
TACCCGCATT CCCAGCGGGT GGGTAACAGT GACTTGCGGG TGTCGCCGGG GGCCGCGCTG
CAGTCGAGTT CGACCGGCGG GACGTCCTCG GGTGCTACGC AGCCAACATC GAGCAGCCAG
CAGGGCGAGG GCAGCCGTGT CACCACGACG TCCAAAACCG ACTTTTGGGC CGAGTTGACG
GAAGCGGTCA AAGGCCTGGT TGGCGCCGGT CCCGGGCGCA GTGTCGTGAT CAGCCCGCAG
GCCGGCATCA TGGCCGTGCA TGCCATGCCC GACGAGTTGC GCCAGGTCGA TAAATTTCTG
AAGGCAGCGC AGATAGCGGT CGAGCGCCAG GTGATGCTGG AAGCCAAAAT TGTGGAGGTC
GAGTTGCGCG ATGGCTACCA GAGCGGCATC GATTGGTCGG CTTTGAAAAA TGGTGGCGGT
TCGACCGGCG CCATGGGCGT GATCGGCGGC AACACCTCTG CCACCACGTC CAGCAATACC
CTGGTGCGCG GTGTGCAGTC CAACCTGCCG GGCTTTTCTG CCGGGTCTGC GTTGCTGGCC
GACGGCATCT CGTTGCCAGC AGCGGGTGCT GGCCTTTTTG GACTGGCTTT CGCCACCGAT
GGCTTCCAGG CGGTGCTCGG TTTCCTGGAA ACCCAGGGCG ACGTGCAGAT CCTTTCCAGT
CCGCGCATTG CGACCTTGAA CAACCAGAAG GCCGTGCTCA AGGTCGGGGC TGAAGATTTT
TTTGTGACCA ATGTATCGGG CGGCACGACG TCGAGCGTCA CGACAGGTTC GACCGCGACC
CTGACCATGC CGTCCATCAC CCTGACACCG TTCTTTTCCG GTATTTCGCT GGACGTGACA
CCGCAGATTG ATGAAGGCAC CAAGATCATG TTGCACGTTC ATCCGTCGGT GACCACGGTC
AGTGAAAGAG CCAAGCAGAT TGATCTGGGC AGCGCCGGCA ATTATGTGTT GCCACTGGCG
TCCAGCAGCA TGAATGAAAC CGACACGCTG GTACGCATTC AGGACGGCAA CATTGTCGCC
ATTGGCGGCT TGATGCAGAT TGAATCCAAC CGCAAGTCCT CAGGCTTGCC CGGCACCAGC
GACGTGCCTT TGTTTTCCAC TTTATTTGGC AACCACGCCA ACACCGGGCG CAAAAAAGAA
GTGGTGGTGC TGATCAAACC CACCATCATC CGCACCGCGC AAGACTGGGA AGCGCAAACC
CGGCGTACCC GCGCGGCGCT GGACGATATT GATTCAGTGC GCGCCCGCGT GATCCGCATT
GACGGCACGG TGCAAGAAGG CGCGCCCAGA ACGCCGGCGC AGTGA
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| Protein sequence | MTRKTDTMMT IFQPTRLGHA VWSPAGALPG LCLAMGVTLL AGCAAERPLR TPDVGEAIRA
DLAVGEAARP AKPVLVPSRI SDALAEPAPP AVAARPEPKL DLLVNNAPAR EVFLAIVADT
RYSMMMHPDV AGTLSVTLRG VTVPEALEAI RDVYGYDFKM EGRRITVYGP TLQTRIFTIN
YPHSQRVGNS DLRVSPGAAL QSSSTGGTSS GATQPTSSSQ QGEGSRVTTT SKTDFWAELT
EAVKGLVGAG PGRSVVISPQ AGIMAVHAMP DELRQVDKFL KAAQIAVERQ VMLEAKIVEV
ELRDGYQSGI DWSALKNGGG STGAMGVIGG NTSATTSSNT LVRGVQSNLP GFSAGSALLA
DGISLPAAGA GLFGLAFATD GFQAVLGFLE TQGDVQILSS PRIATLNNQK AVLKVGAEDF
FVTNVSGGTT SSVTTGSTAT LTMPSITLTP FFSGISLDVT PQIDEGTKIM LHVHPSVTTV
SERAKQIDLG SAGNYVLPLA SSSMNETDTL VRIQDGNIVA IGGLMQIESN RKSSGLPGTS
DVPLFSTLFG NHANTGRKKE VVVLIKPTII RTAQDWEAQT RRTRAALDDI DSVRARVIRI
DGTVQEGAPR TPAQ
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