| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3276 |
|---|
| Symbol | |
|---|
| ID | 3962423 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3636687 |
|---|
| End bp | 3638702 |
|---|
| Gene Length | 2016 bp |
|---|
| Protein Length | 671 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637918096 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_524516 |
|---|
| Protein GI | 89902045 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGC TCATTGAGGC GGTTCTGGTT CTGATGGCGG GTGGTGCTTT GGCGCTGCTG
CCGGCGCGCA ACATCGTGCG CGCCAGCGCC GGACTGGTGT CACAGATGAT TGCCCTGGTC
CTGGTCGGGT CGGTCGCACT GCCGGTGCTG TTTGGCGGCC CGGATGTCAC GGGTGACATG
CCCTGGGCCT ATCCCATCGG CACGCTGCAT TTCAGGCTGG ACGCGCTGGG CGCATTCTTT
CTGAGCTGGT CCCTGCCCAT GACCCTGCTG GGCAGCGTGT ATGCGATGGG TTACCTGCGC
AAGTACTTTG ACAGCCCACG TCACATCGGC GTGCACTTTG GCCTGCTCAA CATGATCTCG
CTCTCGTTCA TTCTGGTGTA CGTCGGCGAG CATGCTGTCA CTTTTTTGCT GGGCTGGGAA
ATCGCCGCCC TGTCGGCCTG GTTGCTGGTG ATCTGGGACT ACCCCAACCA GAAGGTGCGC
TTTGCCGGCT TCAATTACCT GGTTTCCACC CATGTCGGCC TGATTTTCCT GGTGGCGGCG
GTGATGATTC TCTACACCAA CACCCAGTCG TGGTTTCTGG ATGACTATGG CGACTGGATG
AGCCAGAACC CCGGCACGGT GCGCAACACA GTCTTCTTGC TGCTGGTCAC CAGCTTTGGC
CTGAAATCGG CATTTTTCCC GTTTCATTCC TGGCTGCCGC GCGCCCATGC GGCCGCGCCG
GCGCATGTCT CGGCATTGAT GTCAGGCGTG ATTCACAAGG CCGGGCTGTA TGCACTGGTG
CATTTTTTGA TGATCTCGGG CAAGCCGGAC GAGTGGATGG GCTGGTTCTT GATTGCGTTT
TCCGTCACCT CGGCCGTGGT CGGTGGTCTC TATACCGTGG GCCAGCGCGA CCTGAAACGC
TTGCTGGGCT ATTCGTCGAC CGAGAACGTC GGCATTGCCG GCATCGGCTT TGGCGTCGGC
TGCCTGGGGC TGAGCTGGGA CATGCCCACG CTGGTGGCAC TTGGTTTTGG GGGCGGCTTG
CTGCACGTGC TCAACCACGC TTTTTTCAAA TGCCAGTTGT TTTACGCCGC CGGCTGCGTG
TACCAGATCA AGCATGTGAT CGACATCGAG CGCCTGGGCG GCCTGTTCAA GCTGATGCCG
GTGACCGCCG TGTGTTTCAT CATCGGCGGC GTGGCGATTT CTGCCTTGCC GCCGTTCAAC
GGCTTTGCCA GCGAGTTCCT GATCTATTCG GGCCTGTTCA CGGGTGAAAG CATCAATATC
TGGGCCAAAC TCACGCTGGC CCTGACGGCC GCGGCGCTGG CCTTTGTCGG GGCCGTGTCG
GCCCTGAGCA TCACGCGCGC CTTTGGCGTG ATTTTTTTGG GCAACGCGCG CGATGCCAGC
CTGCCTGAAG CGCACGAAGC CAGTGGCTGG ATGCTGTTTC CCATGGTGCT CCATACCATC
GGCACGGTGG TCCTGGGCGT GGCCCCCACC TTGGGCTTTG CCATGGTAGC GGCGCCCACA
GCCCTGTTCC TGCATTTGAC GCCCGACGCC GTGGCCCTTG ATACCCTGCA GTCTGTCACC
GGCACGCTGC TGCGCATCGG CGCCATCTCG GCCGGATTGG TGGCCGTGCT GGTCGTGGTG
CTGGCGCTGG TGGGGTTGCG CGCACGCCTC AAACGACAGA CACCAAACCG CAACGCCACC
TGGGGTTGCG GCTATGGCGC GCCCAATGCG CGCATGCAGT ACACAGGTGG TAGTTTTTCG
GCCGACTTTG CCGGCCGATT CAAAAACATC ATGCTGATGC TCCAGCGGAA AAAAGCACCC
GCCGGGTATT TCCCCCGTGA CAGCTACGTG ATCACTGACT GTGTGGATGC GGTCGAGCGG
CGCCTGTTTG CGGTGATCAG CCACGGCGAT GAATCGGCCA GCGACTTATC GCAAAAACTG
CATGAAGACG ACCCGCGACT CGCCTTTTCA GCCGGTCTGG CTGCCATCGT GGCCATCGGC
GCGCTGGTGT TGCTGGCCGA GGGGGGCTTG CCTTGA
|
|---|
| Protein sequence | MNQLIEAVLV LMAGGALALL PARNIVRASA GLVSQMIALV LVGSVALPVL FGGPDVTGDM
PWAYPIGTLH FRLDALGAFF LSWSLPMTLL GSVYAMGYLR KYFDSPRHIG VHFGLLNMIS
LSFILVYVGE HAVTFLLGWE IAALSAWLLV IWDYPNQKVR FAGFNYLVST HVGLIFLVAA
VMILYTNTQS WFLDDYGDWM SQNPGTVRNT VFLLLVTSFG LKSAFFPFHS WLPRAHAAAP
AHVSALMSGV IHKAGLYALV HFLMISGKPD EWMGWFLIAF SVTSAVVGGL YTVGQRDLKR
LLGYSSTENV GIAGIGFGVG CLGLSWDMPT LVALGFGGGL LHVLNHAFFK CQLFYAAGCV
YQIKHVIDIE RLGGLFKLMP VTAVCFIIGG VAISALPPFN GFASEFLIYS GLFTGESINI
WAKLTLALTA AALAFVGAVS ALSITRAFGV IFLGNARDAS LPEAHEASGW MLFPMVLHTI
GTVVLGVAPT LGFAMVAAPT ALFLHLTPDA VALDTLQSVT GTLLRIGAIS AGLVAVLVVV
LALVGLRARL KRQTPNRNAT WGCGYGAPNA RMQYTGGSFS ADFAGRFKNI MLMLQRKKAP
AGYFPRDSYV ITDCVDAVER RLFAVISHGD ESASDLSQKL HEDDPRLAFS AGLAAIVAIG
ALVLLAEGGL P
|
|---|
| |