| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3273 |
|---|
| Symbol | |
|---|
| ID | 3962420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3632526 |
|---|
| End bp | 3633809 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637918093 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_524513 |
|---|
| Protein GI | 89902042 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCAACC TCCCCCCGCC GCCTGCAACC ACTGGCCTTG TGCTGAGCGG CGGCGGCGCC
CGCGCGGCCT ACCAGGTCGG CGTACTGGAA GCCATCGCCG ACATCAGAAA AGCCGCCGGC
GTGACCGGGC GCACCAATCC GTTTCCCATC ATCACCGGCA CCTCGGCCGG CGCCGTCAAC
GCCGCGGCAC TGGCCTGCGG CGCCGATGAT TTCGACACCA CGGTGCGCCT CATCGCCGAG
GTCTGGAGGA ACATTCATGC CGAGCAGATT TACCGGTCCG ACTCCTTCAG CATGCTGCGT
TCAATCGCCT CGTTGAGGGG CCTGCTGGCG CTGGGCTGGG CGGTCGCCAG ATGGCGTCAC
AAGAAGCCCC GCTCCTTGCT GGACAACTCG CCTCTCGTTG ATTTTCTTGA CCAATTGGTC
CCCCTGGAGC GCCTGCCCGC ACTCATTCGC ATCGGCCACC TGCAGGCACT GGCGGTCACG
GCATCAAGCT ACAGCTCGGG CGAGCACATC ACTTTTTTCC AGGGTGACGC GCAGCTCATG
CCCTGGGAGC GCTCGCAACG GCGCGCGGTG CGCGACCGCA TCACCCATGC CCACCTGCTG
GCGTCGTCGG CCATCCCCTT TGTGTTTCCG GCCACACCTT TGCAGATTGA CGGGCTGACC
CAGTATTTTG GGGACGGCTC CATGCGCCAG TCGGCGCCCG TGGCGGCGGC GATCCACCTG
GGCGCGAGCC GCATTCTGGT GATTGGCGCC GGACGTATGC ATGAACCCAG GAACGAGGCC
TGCCTGCAAA CCTCCAGCAG CTACCCGTCA TTGGCACAGA TCGCCGGCCA CACCCTGTCC
AACATCTTTC TGGACGCGCT GGCGGTGGAC GTGGAGCGCA TGCGCCGCAT CAATCAGACC
CTGTCGCTGG TGCCGCCCGA GGCACGCTGC GGCAGTGCGC TGCGGCCCGT GGAGTTGCTG
ATGATTGCAC CGTCGCAGCG GTTCGACACG ATTGCCTCCC GCCACATCGC CGAATTGCCA
CCGGCGGTAC GCACCATGCT GGGCGGCGTC GGCGTGTCAA GCAGCCCGCA AGACATCAAA
GGCGGCACAC TGGCAAGTTA TCTGCTGTTT GAGGGCGGCT ACACCCGCGA ATTGATGGCG
CTGGGCCACG CCGACGCCAT GCGGCAACGC GTCGAGGTGT GCACGTTTTT TGGCTGGGTC
GCCCCGGCGA CCGCTGACCA ACCCGGCGAA CTGCCTGACA AGCCCGTTGT CGAGCGTCGG
CTGGACCCTT TGCGTCTGCG CTGA
|
|---|
| Protein sequence | MPNLPPPPAT TGLVLSGGGA RAAYQVGVLE AIADIRKAAG VTGRTNPFPI ITGTSAGAVN
AAALACGADD FDTTVRLIAE VWRNIHAEQI YRSDSFSMLR SIASLRGLLA LGWAVARWRH
KKPRSLLDNS PLVDFLDQLV PLERLPALIR IGHLQALAVT ASSYSSGEHI TFFQGDAQLM
PWERSQRRAV RDRITHAHLL ASSAIPFVFP ATPLQIDGLT QYFGDGSMRQ SAPVAAAIHL
GASRILVIGA GRMHEPRNEA CLQTSSSYPS LAQIAGHTLS NIFLDALAVD VERMRRINQT
LSLVPPEARC GSALRPVELL MIAPSQRFDT IASRHIAELP PAVRTMLGGV GVSSSPQDIK
GGTLASYLLF EGGYTRELMA LGHADAMRQR VEVCTFFGWV APATADQPGE LPDKPVVERR
LDPLRLR
|
|---|
| |