| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3250 |
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| Symbol | |
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| ID | 3960598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3601767 |
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| End bp | 3604877 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637918070 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_524490 |
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| Protein GI | 89902019 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTGGG CCCGCCTGAG CCGGCTGCCC CTGCTCATCC TGGTCGTCTC GCTTGGCGTG
ACCTGGCTGC TATGGAATCA CGAGCGGCAA ATCTCGCGCA ATCAGGTGCG CTCCCAGTTC
GACTTTGCGC TGCGCGATGC AGTCAGCCGG GTTGAGCAGC GCATCGCCAG CTACGAGCAG
ATGTTGCGTG GCGTGCAAGG CCTGCTCGCG ACCACCGATG CCGCAGACCG CGACAAGTTC
CGCGACTACG TCAGCGCGCT TCAACTCGAC GCCAACTTTT CCGGCATCCA GGCTATCGGT
CTCGCCGAGT GGGTGGCGGC GTCAGGCAAA GACGCCCACC TGGCCGCCAT GCGCCGGCTC
GGCTTCGCTG ACTACGCCAT TTACCCCCTG GGTGAGCGCG AAAATTACGC CCCGATCATC
CAGCGCGAGC CCTATACGGG CAACAACCGC ATCCCCACCG GCTTTGACCC GTGGTCGGAA
CCGGTGCGGC GACTGGCGAT GGAGAAGGCG AGGGACTCTG GCATGGCGGC GATATCCGGC
AAGGTCCGCC TGACCGTGGA CAGCCAGCCA GATGCACTAC CCGGCTTCAT CATGTTTCTG
CCGGTTTATG CGCGCGCTCA GCCACATGAC AGCGTGGCGC TTCGCCAAGC CCACCTGAGC
GCTTGGGTCT ACGCCTCGTT CCGCATGAAC GACCTGATGG CCAGCCTGTA TGGCGAACAG
CCGCCCGGTC TCTCAGTCGC CATTTACGAT GGCGTCGAAC CATCAGCGAG CACGCTGCTC
TATTCAACCT CGGGTGACGC GGCGAAACCG CGCCGTGCCG CCATGGCAGC CGATGAGTAC
CTGGTCGTCG CGGGGCGCAC CTGGACGCTC TCCATGAGCG CCAAGGACGA GTTCAAGGAC
AGCGTCGGCA GCAGTGCTGA GTCGCTGATC GCAGTCGCCG GCACGGGCTT GAGCTTGTTG
CTGGCCTTGC TCGCGTGGCT CATGGCAACC GGGCGCGACC GTGCCGTCCG TCTCGCTGCC
ACCATGACCA GGGAACTGCG CGAGAGTGAA GAAAAGTTCC GCGCCATCGC CGACTGCACC
GTCAACCTGG AAGTCTGGTG GGGGCTCGAC GGCCGGCCAC GCTGGATCAA CCCCTCGGTC
AAGGACTACA GCGGCTATAC CGTGCAGGAG TGCCTGGCCA TGCCCGACTT CGCTGGTACG
CTGATTCATC CTGAAGACAT GCCGCGTGTT GCACCCGAGT TGCAGAAGGG GCTGCAGGGC
CTGCGGGGCG ACGACCTGGA ATTCCGGTGT GTCCGCAAGG ATGGCTCCGT GTTCTGGCTG
TCCGCGTCCT GGGTCCCCAT CCAAGACGCC AAAGGGGTCT TCACGGGCTT TCGCACCAGC
GGACGCGACG TCACCGACCG CAAACAGGCC GAGGCCGAAC TGCGCATCGC CGCTGTCGCC
TTCGACTCGC TGGAGGGCAT GATGATGACC GATGCCAGCA GCGTGATCCT GCGGGTCAAC
AAGGCATTCA CCGAGATCAC GGGTTACTCG GCCGAGGAAG CCGTGGGTCA GACGCCACGG
CTGATTCAAT CGGGCCGTCA CGGCGAGGAC TTTTATCGCG CCATGTGGGA CGACATCCGC
CGCAAGGGCG GCTGGCAGGG CGAAGTCTGG AACCGGCGCA AGAGTGGCGA GGTCTATCCG
CAATTGCTCA GCATCTCGGT GGTGAAGGAT GCCGATGGCA CCGTGACCCA TTACATCGCC
GCGCACCATG ATATTTCGGA GCGCAAGAAC GCAGAGGAAA GGATCAAGGA GTTGGCTTTT
TTTGACCAGC TCACGGGTCT GGCCAATCGA ACGCTCTTGC TCGATCGCGC CGTACAGACC
ATGGCCGCGA GTTCGCGTGA CGGCAGTTTC GGCGCGCTGA TGTTCATTGA CCTCGACAAT
TTCAAGATGC TCAACGACAC ACTGGGCCAT GACATGGGGG ACATCTTGCT CAAGCAGGTG
GCGCAGCGTC TGAACACCTG TGTGCGGGAC GGCGACACCG TCGCCCGGCT CGGCGGGGAT
GAATTCGTCG TCAAGCTGGC AGGTCTGGGC ACAGTGGCGG GAGAGGCCGC GGTCAGTGCC
GAAACCGTTG CAGACAAGAT TCTCACCGCC CTCAACCAGA CCTACCAGCT GGGCAGTGTG
GCCTACCACA GCACACCGAG CATTGGTGTG ACGCTGTTCA AAGGGCAGAG CGTCGCGATC
GAGGAGTTGA TGAAGCAGGC TGATCTTGCC ATGTACCGGG CCAAGGCCGC CAGTCGCAAT
ACGGTTCGCT TCTTTGATCC GGCCATGGAA TCCGTCATGA TGGTGCGTGC CGCGCTGGAG
CGCGATCTGC GTCAGGCCCT GGAGGAGCAT CAGTTCGTGC TCCATTACCA GGCCCAGGTC
GCGGGGGATT ACCACTTGAC AGGTGCCGAA GTCTTGGTGC GCTGGCAGCA TCCCCAGCGC
GGCATGGTGT GGCCCGATGA CTTCATTCCT GCCGCCGAAG AAACCGGCTT GATTTTGCCT
TTGGGCCACT GGGTACTGCA AACTGCCTGC ACCCAGCTGA CGATCTGGGC GGCGCGGCCC
GAGACGGCCG ATCTCACGGT GGCGGTGAAT GTCAGCGCTC AGCAGTTCCG CCAGCCCGAC
TTCGTGGCCC AGGTGCTGGC GGTCCTCGCT GCGACCGGGG CCAACCCGCA GCGCCTCAAG
CTGGAGCTGA CTGAAAGCCT GCTGGTGTCG AATGTGCAAG ACCTGATCGA GAAAATGGCG
GCGTTGAAAG CCAAGGGCGT GGGCTTCTCG CTGGACGACT TCGGCACCGG CTTTTCCTCG
CTGTCTTACC TGAAGCGGCT GCCGCTGGAT CAGCTCAAGA TTGACAAGTC CTTTGTGCGT
GACGTGCTCA CCGATCCCAA TGACGCCGCC ATTGCCAAGA CCATCATTGC GCTGGCCCAG
AGCCTGGCGC TGGGCGTCAT CGCAGAAGGG GTGGAAACGT CAGCGCAACG GGACTTCCTG
GCCCAGGCAG GCTGCCAGGC CTATCAGGGC TATTTCTTCA GCCGACCGGT GCCGCTCGAA
GATTTCGAGC AGCTTTGCGC AGCGGGCTTG CGTGCGCCGG CAGGCGTCTG A
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| Protein sequence | MSWARLSRLP LLILVVSLGV TWLLWNHERQ ISRNQVRSQF DFALRDAVSR VEQRIASYEQ
MLRGVQGLLA TTDAADRDKF RDYVSALQLD ANFSGIQAIG LAEWVAASGK DAHLAAMRRL
GFADYAIYPL GERENYAPII QREPYTGNNR IPTGFDPWSE PVRRLAMEKA RDSGMAAISG
KVRLTVDSQP DALPGFIMFL PVYARAQPHD SVALRQAHLS AWVYASFRMN DLMASLYGEQ
PPGLSVAIYD GVEPSASTLL YSTSGDAAKP RRAAMAADEY LVVAGRTWTL SMSAKDEFKD
SVGSSAESLI AVAGTGLSLL LALLAWLMAT GRDRAVRLAA TMTRELRESE EKFRAIADCT
VNLEVWWGLD GRPRWINPSV KDYSGYTVQE CLAMPDFAGT LIHPEDMPRV APELQKGLQG
LRGDDLEFRC VRKDGSVFWL SASWVPIQDA KGVFTGFRTS GRDVTDRKQA EAELRIAAVA
FDSLEGMMMT DASSVILRVN KAFTEITGYS AEEAVGQTPR LIQSGRHGED FYRAMWDDIR
RKGGWQGEVW NRRKSGEVYP QLLSISVVKD ADGTVTHYIA AHHDISERKN AEERIKELAF
FDQLTGLANR TLLLDRAVQT MAASSRDGSF GALMFIDLDN FKMLNDTLGH DMGDILLKQV
AQRLNTCVRD GDTVARLGGD EFVVKLAGLG TVAGEAAVSA ETVADKILTA LNQTYQLGSV
AYHSTPSIGV TLFKGQSVAI EELMKQADLA MYRAKAASRN TVRFFDPAME SVMMVRAALE
RDLRQALEEH QFVLHYQAQV AGDYHLTGAE VLVRWQHPQR GMVWPDDFIP AAEETGLILP
LGHWVLQTAC TQLTIWAARP ETADLTVAVN VSAQQFRQPD FVAQVLAVLA ATGANPQRLK
LELTESLLVS NVQDLIEKMA ALKAKGVGFS LDDFGTGFSS LSYLKRLPLD QLKIDKSFVR
DVLTDPNDAA IAKTIIALAQ SLALGVIAEG VETSAQRDFL AQAGCQAYQG YFFSRPVPLE
DFEQLCAAGL RAPAGV
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