Gene Rfer_3199 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3199 
Symbol 
ID3961175 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3540918 
End bp3542870 
Gene Length1953 bp 
Protein Length650 aa 
Translation table11 
GC content57% 
IMG OID637918018 
Productnitrous-oxide reductase 
Protein accessionYP_524439 
Protein GI89901968 
COG category[C] Energy production and conversion 
COG ID[COG4263] Nitrous oxide reductase 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.324425 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACACTC CCAACAATAA AATCGCGATC CCCAGGGATC TGGGTCGTCG CAATTTTCTC 
AACAAAACGG CAATTGCCGG CCTTGCCGGG GCTGGCTTGT CGGCCGGCCT GGTGGCCTGC
AACAAGACGG CCGGTCCGGC TGCGACCGGC AGCCCGGCTG TAGCGGCTTC GGAGCCGGCC
AAGAGTGGTG CTGTCGATTA CTCAGCCTAC GAGGTGCATC CCGGCCAACT CGATACTTAC
TACTCCTTTT CTTCCGGCGG TCACTCGGGC GAAGTTCGTA TCTATGGCTT GCCCTCGGGC
CGCTTGTTCA AGCGCATTCC GGTGTTCAAC ATTGACTGTC TCGTCGGCTG GGGTATCACC
AACGAATCGA AGAAGATCAT GGGCACCAAC GCGGACGGCA GTCTGAAATA CTTCACGGGT
GACACCCATC ATGTGCATCC GTCCTACACC GACGGAACCT ACAACGGCAA ACACCTTTTC
GTCAATGACA AAATCCATGG TCGCATCGCG CGCGTGCGGC TCGATACCAT GGAGTGCGAC
AAGATCACCG AATTGCCCAA CGTCCAGGGT TTCCACGGGA TTTTCCCGGA CAAGCGCGAT
CCGGTTGACG AAAAGATCAA CTACACAACC CGCGTTTTTT GTGGCAACGA GTTCCACATT
CCCCAGCCCA ACGACGGCCG CGACCTCAAC GACCCGACCA AGTATTTCTG CCTGTTCACG
TGTATCGATG CGGAAACCCT GGAGCCGCGC TGGCAGGTCA AGGTAGACGG CAACATGGAT
TTGGTGGCGA CCTCCTACGA CGGCAAACTG GCATGTTCCA ATCAATACAA CATGGAGAAT
GGCGCCCATT ATGAGGACAT GATGTCGCTT GAGCGCGACT CCTGCATCTT CTTCAACATT
GCCCGCATCG AGGCAGCTGT CAAGGCCGGA AAAACATTTT TCATCGGCAA ATCCAAGGTT
CCGGTGGTGG ACGGCACCAA ATCCGCCAAC GCAGACCCGA AGACCGCGCT GACCTGCTAT
GTGCCGACAC CAAAGAACCC GCACGGCGTC AACGCCAGCC CGGACGGCAA GTACTACGCC
TGCTCCGGCA AGCTCTCGCC GACGGCCACC CTGATTGAGC ATGCTTTGGT ACTGAAATGG
TTCGACGGTG AGCTCAAGGA GCCGCGCGAC ACCGTGGTCG CCGAACCTGA AATCGGTCTG
GGCCCACTGC ACACCGGTTT CGACAACAAG GGCAACGCCT ATACGACGCT CTTCCTGGAC
AGCCAGATCG TCAAATGGAA CCTCGAGGCC GCCATCAAAT CCTTCAAGGG TGATAAAGCG
GCAAAGCCGG TGGTGGACCG CATCGACGTC CAATACCAGC CAGGCCACGG TTTTACGTCC
ATGGGCGAGA CCAAGAATGC CGACGGCAAG TTCTTCCTGT CCGACAACAA GTTCTCCAAG
GACCGCTTCC TGCCGGTTGG ACCGCTGCAC CCGGAAACCG CGCAACTGAT TGACATCAGC
GGCGACAAGA TGAAGCTCGT GGCCGACCAC TCGGTGTACT CCGAGCCGCA TGACTCCATC
ATCATTCCAC GCGAGCTGAT CAGGACCCGG CAGGTCTATG ACATCAACGA GTTCCCCAAC
GCGGTCAAGG ATGCCAAGGA ATGTCGTGTC GAACGCAAAG GCAAGAAGGT GACGGTCTAC
CTGACATCTC AGGCGCCAAC CTTCGGACTG CGCGAGTGGA CGGTCAAAAA GGGCGATGAG
GTCACCATCA TCCTCACCAA CCTGGACAAG GTAGAGGATC TGACCCATGG CTTTGCCATC
CCGAACTACA ACATCAACTT TATTGTCAAC CCCCAGGAGA CCAAATCAGT CACCTTCAAG
GCCGACAAGC CCGGTGTCTA TTGGTGCTAC TGCACCAACT TCTGCCATGC ACTGCACCTT
GAGATGCGTT CGCGCATGCT GGTGGAAGCC TGA
 
Protein sequence
MNTPNNKIAI PRDLGRRNFL NKTAIAGLAG AGLSAGLVAC NKTAGPAATG SPAVAASEPA 
KSGAVDYSAY EVHPGQLDTY YSFSSGGHSG EVRIYGLPSG RLFKRIPVFN IDCLVGWGIT
NESKKIMGTN ADGSLKYFTG DTHHVHPSYT DGTYNGKHLF VNDKIHGRIA RVRLDTMECD
KITELPNVQG FHGIFPDKRD PVDEKINYTT RVFCGNEFHI PQPNDGRDLN DPTKYFCLFT
CIDAETLEPR WQVKVDGNMD LVATSYDGKL ACSNQYNMEN GAHYEDMMSL ERDSCIFFNI
ARIEAAVKAG KTFFIGKSKV PVVDGTKSAN ADPKTALTCY VPTPKNPHGV NASPDGKYYA
CSGKLSPTAT LIEHALVLKW FDGELKEPRD TVVAEPEIGL GPLHTGFDNK GNAYTTLFLD
SQIVKWNLEA AIKSFKGDKA AKPVVDRIDV QYQPGHGFTS MGETKNADGK FFLSDNKFSK
DRFLPVGPLH PETAQLIDIS GDKMKLVADH SVYSEPHDSI IIPRELIRTR QVYDINEFPN
AVKDAKECRV ERKGKKVTVY LTSQAPTFGL REWTVKKGDE VTIILTNLDK VEDLTHGFAI
PNYNINFIVN PQETKSVTFK ADKPGVYWCY CTNFCHALHL EMRSRMLVEA