| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3192 |
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| Symbol | |
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| ID | 3963062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3531147 |
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| End bp | 3533357 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637918011 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_524432 |
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| Protein GI | 89901961 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.178268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGAAA GTATTCAACC CAACGCGCCG CGGCGTGACG CCCTGGAAGA GTTGCAACTT
GCCTTGCGCG AGCAGCAAGT CATTCTCGAC ACCGCAGGCG TCGGCATTGT TTTCATTAAA
AATCGCCTGG TGGTGCGCTG CAATCAGCGC TTTGGGCAGA TCTTTGGCCA TTCCGATGCG
GCCGCAATTT TGGGCAGCAC CAGCCCGTCG CTGTACCCCG ACGACTTGGC TGCTCACGCA
CTGGCTGAAG CCGCCTACCC GGCCATGGCG CAAGGCCTGA CCTTCAAGTC AGAAGTGCTG
ATGAAGCGCC GCGATGGGTC GTCGTTCTGG GCTCATCTGA CCGGCAAACT CGTCAACCCG
GCGGACCCTC TCGCGGGCTC GATCTGGATC GTGGATGACA TCGATGAACA AAAAGCCGCG
CAGGCACAGC TGCAGTCGGT ATTGACCGAG CAGAACCTGA TTCTGGACAA TGCCATGGTC
GGCATCGTAT TTCTGCGCAA CCGCATCGCC ACCCGCTGTA ACCAGCGCTT TGAAACCCTT
TTGGGCTACG AGCCAGGTGA GCTGCAAGGC GTCTCCTCGC GCCAGTGGTA TCTGACGAAG
CAAGACTGGA TTGAAGCCGA ACCCCGATGG AAAGCACCGT TTGCGGCCGG TCATGGGTTT
GAGGGTGAAA TTCAGTTGCG TAAGAAAGAC GGCACTGCCA TTCACTGTGA GGTTCGCGCC
AAGGCCATTA ACGCCAGCGA CCCGGAGCAG GGGGCGATCT GGATCACCAT GGACATCACC
GCGCGAAAAA CGGCCGAAAA CGAACTGCTG CAGGCCCGCG CCGACCTTGA AAAACTGGTG
GAAGTCCGCA CCCTGGAGCT CAGCCGCACT GTCCAGGAAC TCAAGAACAA AGCCGCCGAA
CAAAAAACCG CCGAAGCCTA CATTCAGCGG CTGGCCCACT TTGATGCGCT CACGGGCCTG
CCCAATCGAT TGCTGCTCAA TGACCGTTGC CAGCAGGCCC TGAGCGTGGC GCAACGCGGG
CGCCAAAGTG TGGCCCTGAT GTTTCTGGAC CTTGATCACT TCAAGAACGT CAATGATTCT
TTGGGTCACC GGGTCGGCGA TGAGGTGCTG GTTGAATTGG CGGCCCGCCT GAAAGCCGCC
GTGCGCGAGC AAGACACCGT CTCGCGCCTG GGGGGCGACG AATTCATCCT GCTGCTGCCC
GACACCGATG CAATGGGAGC CGCCCATTTG GCTGAAAAAT TGCTGCAAAC AGCACTGCAG
CCGATCCTGA TTGAACAGCA TGAGCTGACC GTCACGCCAT CGATCGGCAT CGCGCTCTAC
CCCAAGGATG GCACTGACCT CGACACGCTG TCCAGATGTG CCGATGCGGC CATGTACCGT
GCCAAGGCCG ATGGGCGCAA CGGCTACCGG TTTTACACCG CCCAGATACA AGCCCACTCT
GACCGCATGC TGCTGCTCGA CAATGCGCTG CGCCGGGCCC TCGAGCGCAA GCAGCTTGAG
CTGCATTACC AGCCCCAAAT CGCGCTGATG AGCGGTCAAG TGGTCGGCGC CGAGGCTTTG
CTGCGCTGGA CCCACCCGGA ACTTGGCGCC ATTTCACCGG TCGAGTTCAT TCCAATTGCC
GAAAACAATG GCCTGATCCT GCCGATTGGG GAGTGGGTCA TGCGCACCGC CACCCGGCAA
CTGTCCACCT GGATCGCGCG TGGCATGGCA CCCATCACCA TGGCGGTCAA TTTGTCCGCG
CTTCAGTTTC GCAACCCGAA CCTGCCCCAG CTCGTCACCC GCATTCTGGA GGACGCGGCC
CTGCCGCCCC AACTGCTGGA GATTGAGCTG ACGGAAGGCG TGGCGATGAC CCATCCGCTG
GAAGCGGTCG CCGTGATGAA TGAACTGCAC CAACGCGGCG TGCGCATGGC CATCGATGAT
TTTGGCACCG GTTATTCCTC ATTGAGCTAC CTGAAAAAAT TTCAGGTTTA CAAGCTCAAG
ATCGACCAGT CGTTCGTACG CGACATCACC GAGGACCCCG ACGACAAAGC CATCGTGGGC
GCCGTCATCA GCATGGCCAG CAGCCTGGGG CTGCAAACCA TTGCCGAAGG GGTGGAGACC
GAGGGTCAGC TCGAGTTTCT GCGCGCTCGG GGCTGCAACG AGGCGCAGGG TTTTTATTTC
AGTCGGCCCT TGCCGACGCA GGCGTTCGAG GACTTCGTGC GCAAGCAATA A
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| Protein sequence | MPESIQPNAP RRDALEELQL ALREQQVILD TAGVGIVFIK NRLVVRCNQR FGQIFGHSDA
AAILGSTSPS LYPDDLAAHA LAEAAYPAMA QGLTFKSEVL MKRRDGSSFW AHLTGKLVNP
ADPLAGSIWI VDDIDEQKAA QAQLQSVLTE QNLILDNAMV GIVFLRNRIA TRCNQRFETL
LGYEPGELQG VSSRQWYLTK QDWIEAEPRW KAPFAAGHGF EGEIQLRKKD GTAIHCEVRA
KAINASDPEQ GAIWITMDIT ARKTAENELL QARADLEKLV EVRTLELSRT VQELKNKAAE
QKTAEAYIQR LAHFDALTGL PNRLLLNDRC QQALSVAQRG RQSVALMFLD LDHFKNVNDS
LGHRVGDEVL VELAARLKAA VREQDTVSRL GGDEFILLLP DTDAMGAAHL AEKLLQTALQ
PILIEQHELT VTPSIGIALY PKDGTDLDTL SRCADAAMYR AKADGRNGYR FYTAQIQAHS
DRMLLLDNAL RRALERKQLE LHYQPQIALM SGQVVGAEAL LRWTHPELGA ISPVEFIPIA
ENNGLILPIG EWVMRTATRQ LSTWIARGMA PITMAVNLSA LQFRNPNLPQ LVTRILEDAA
LPPQLLEIEL TEGVAMTHPL EAVAVMNELH QRGVRMAIDD FGTGYSSLSY LKKFQVYKLK
IDQSFVRDIT EDPDDKAIVG AVISMASSLG LQTIAEGVET EGQLEFLRAR GCNEAQGFYF
SRPLPTQAFE DFVRKQ
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