Gene Rfer_3102 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3102 
Symbol 
ID3962115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3440291 
End bp3442222 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content60% 
IMG OID637917921 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein-like 
Protein accessionYP_524342 
Protein GI89901871 
COG category[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase 
TIGRFAM ID[TIGR02323] phosphonate C-P lyase system protein PhnK 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.94565 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCCCA CCAAACGCGA CCCAATGAAC TCTTCCTTGG CTGAGGCTGC GAAGTCAACT 
GCTTTGCCGT TGCGGGCAAT GCCGGGTAAT CGAGTACTGG CGGTCGACAA CCTGTCAGTG
CGGTTTACCA CCTCTGAGCG TACCGTTGAC GCGGTGTGCG GGCTATCGTT TCACGTTGAC
CAGTGCGAAA CCTTGGCCAT TGTGGGTGAA TCAGGCTCGG GCAAATCAGT CACCTCGCTG
GCATTGATGC GACTGGTCGA GCATGGCGGC GGGCGCATCG TCAACGGCAG CATGATGTTA
AGGCGCCGTA GCGGCGATGT GCTTGACCTG GCACAGGCGC GCAACGCCAC GCTGCGCAGT
ATCCGCGGTG CCGACATTGC GATGATTTTC CAGGAGCCGA TGACCTCGCT CAACCCAGTA
TTCACAGCCG GTGACCAGAT TGCAGAATCC ATTCGGGTGC ACCAGGGAAA AAGCGCCTCG
GCAGCAAAGG CCGAGGCATT GCGCATGCTG GAGTTGGTGC GTATTCCGGA AGCACGCAAC
GTGCTGGATC GCTTCCCGCA TCAGCTCTCG GGCGGCATGC GTCAGCGTGT GATGATTGCC
ATGGCGCTGT CATGCAAGCC CTCGCTCCTG ATTGCCGATG AGCCAACCAC CGCCCTTGAC
GTGACGATCC AGGCGCAGAT TTTGCAGCTG ATTCGGGCTC TGCAAGAAGA GATGCACATG
GGTGTGGTCT TCATTACGCA CGACATGGGC GTGGTGGCCG AAGTGGCCGA CCGCGTTTTG
GTGATGTACC GCGGCAACAA AGTAGAAGAA GGCGCGTCAG AGGAGATTTT TGCGCACCCT
CGGCACGCTT ACACACGTGC GTTGCTCTCG GCCGTACCCA GGCTTGGCGC CATGGAAGGC
ACCGAACTGC CGCTCAAATT TGAATTGCTT CGCACCGAAG AAGCCGACGC AGCGCCGACC
GAGCCACCCC GCCGGCAAGA CACCGTAGTA CCTGGCAGTG CGCCGATATT GCGAGTGCAA
GATCTGGTGA CCCGATTTGA TGTGCGGAGT GGATTTTTTG GCCGCGTTAC GCGCCGGGTG
CATGCGGTTG AAAAGGTCAG CTTTGACATT CGTCCGGGCG AGACGCTGGC GCTCGTCGGT
GAATCGGGCT GCGGCAAATC CACCACCGGT CGATCGCTGT TGCGTCTGGT TGAAAGTCAG
AGCGGCGTGA TTGAGTTTGG CGGACAAAAC ATCCGCAACC TGCCCACCAG TACGCTACAG
GGATTGCGGC GCAACATCCA ATTCATCTTC CAGGATCCGT TTGCCTCGCT GGACCCGCGC
CTCACTGTTG GGTTTTCCAT CATGGAGCCC TTGCTGGTGC ACAAGATTGC CAAGGGCAAA
CAAGCCCAGA AACGCGTCGA CTGGCTGCTT GAAAAAGTCG GTTTGCCGGC CGAGTTCGCC
CAGCGCTACC CGCATGAGTT CTCGGGCGGC CAGCGCCAGC GCGTCGCCAT TGCGCGCGCG
CTGGCGCTCA ATCCCAAGGT GGTGATTGCC GATGAATCAG TGTCGGCGCT CGACGTCTCG
ATTCAAGCTC AGATCGTCAA CCTGATGCTG GACCTGCAGC GCGAGCTGGG CATCGCCTTT
CTCTTTATTT CGCACGACAT GGCGGTGGTC GAGCGCATCA GCCACCGCGT GGCTGTGATG
TTTCTGGGCC AGATTGTCGA AATTGGCCCG CGCCGCGCCA TATTCGAAAA CCCCCAGCAC
GCCTATACCC GTAAGCTGAT GGCCGCAGTC CCCGTGGCCG ACCCGAGTCG CAGGCATCTG
AGCCGTCAAC TGATGTCGGA TGAAATTCCA AGTCCGATTC GCGCCGTCGG TGACGAGCCC
GTTGTACCAC CGCTGATCGA AGTGGGCCCC GAACATTTTG TCGCCAGGCA CCGTATCGCC
GGTGCCTACT GA
 
Protein sequence
MTPTKRDPMN SSLAEAAKST ALPLRAMPGN RVLAVDNLSV RFTTSERTVD AVCGLSFHVD 
QCETLAIVGE SGSGKSVTSL ALMRLVEHGG GRIVNGSMML RRRSGDVLDL AQARNATLRS
IRGADIAMIF QEPMTSLNPV FTAGDQIAES IRVHQGKSAS AAKAEALRML ELVRIPEARN
VLDRFPHQLS GGMRQRVMIA MALSCKPSLL IADEPTTALD VTIQAQILQL IRALQEEMHM
GVVFITHDMG VVAEVADRVL VMYRGNKVEE GASEEIFAHP RHAYTRALLS AVPRLGAMEG
TELPLKFELL RTEEADAAPT EPPRRQDTVV PGSAPILRVQ DLVTRFDVRS GFFGRVTRRV
HAVEKVSFDI RPGETLALVG ESGCGKSTTG RSLLRLVESQ SGVIEFGGQN IRNLPTSTLQ
GLRRNIQFIF QDPFASLDPR LTVGFSIMEP LLVHKIAKGK QAQKRVDWLL EKVGLPAEFA
QRYPHEFSGG QRQRVAIARA LALNPKVVIA DESVSALDVS IQAQIVNLML DLQRELGIAF
LFISHDMAVV ERISHRVAVM FLGQIVEIGP RRAIFENPQH AYTRKLMAAV PVADPSRRHL
SRQLMSDEIP SPIRAVGDEP VVPPLIEVGP EHFVARHRIA GAY