| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3097 |
|---|
| Symbol | |
|---|
| ID | 3963293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3435400 |
|---|
| End bp | 3436683 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637917917 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_524338 |
|---|
| Protein GI | 89901867 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGAAT CGCTCGCTGA TCGCTTCGAC CTGGAAGGGT TCAGCCATGA TTGGCATCGT
ACCGGCGCGG CCGCCCTGAC CGCCTTGCGC CTGAGAGACT ATGCCTTGGT CATCAGCGAC
ATCCGCCTGC CCGACATGAC AGGCGATGTG CTGTTTGAAC AACTCCTGAC GGAACAACGC
AGCCTGCCAC CGTTCATCTT CATAACCGGA CATGGCGACA TCGACACCGC CGTGCGCCTG
CTCAAACGCG GCGCGCAGGA TTACATCACC AAGCCCTTCG ACCTTGATGC CTTGATTGAC
AAGATTCACG GCATCGTCGC ACCGGAGGAT GCGTCAGGGA CCGGCAGCCT GGGGTGTTCG
CCGGTCATGC GCCAGATCGA AGCCATGCTG CCTCGGTTGG CCGCGAGCGC CGCCTCGGTA
CTGATCACCG GTGAATCCGG CGTTGGTAAG GAGCGTGTGG CGCAAGCGCT GCACCAGTTG
ACCGGCGCCG ACAAGCCCTT TATTGCGGTC AACTGCGGCG CGCTGACCGA AAGCCTATTG
GAAGCCGAAC TCTTTGGTTA CGAAAAAGGC GCTTTCACAG GTGCAGTCCG CACAAAAAAG
GGCGTTTTCG AGCAGGCGCA TGGCGGCACA TTGTTACTTG ATGAAATAGG TGACATGCCT
CTATCTATGC AGGTCAAGCT GCTACGCGCG CTGCAGGAGC GCTGCATCGT ACGGGTCGGT
GGAGAAACCC CGATTCCAGT TGATATCCGC CTGGTCTGCG CCACGCATCA AGTGCTGCAG
GAAGCGGTAA TCCGGGGCGA TTTTCGCGAA GACCTGTATT ACCGGATCAA TGTGGTCGAA
CTGCGCATCC CGCCACTACG CGAACGCAGC GAGGACATTC TGCCGATTGC CCAGCACTTG
CTGGCAGAGA TTGCCGACGC CAGTGGCAAG CCACCCCCCG GTCTGACGCC AGCAGCCGAA
CATGCGATCA AGGCCTACCG CTGGCCCGGC AACATTCGGG AACTCAAAAA CACTCTGGAG
CGCGCCAGCT TGATGAGCGA CGGCCGCTCG ATTTCGCATG ACATTCTGTT CGACCGCCCC
GCGCCGCCAT TGAGCGGGCA GCTCGATATG GCGGGCAGCC TGCGCGACTA TTTGAATGAA
TGCGAGCGTG ACTTTATCGT GCACGCACTC GACGGCTGCC AATGGCAGAT TCAATGCTGC
GCGGACTCAT TGGGCATTAG CCGTAAAAAC CTGTGGGAGA AAATGCGCAA GCTGGAGATC
GTCAAAGGCA GCGATGCGGA TTAG
|
|---|
| Protein sequence | MGESLADRFD LEGFSHDWHR TGAAALTALR LRDYALVISD IRLPDMTGDV LFEQLLTEQR
SLPPFIFITG HGDIDTAVRL LKRGAQDYIT KPFDLDALID KIHGIVAPED ASGTGSLGCS
PVMRQIEAML PRLAASAASV LITGESGVGK ERVAQALHQL TGADKPFIAV NCGALTESLL
EAELFGYEKG AFTGAVRTKK GVFEQAHGGT LLLDEIGDMP LSMQVKLLRA LQERCIVRVG
GETPIPVDIR LVCATHQVLQ EAVIRGDFRE DLYYRINVVE LRIPPLRERS EDILPIAQHL
LAEIADASGK PPPGLTPAAE HAIKAYRWPG NIRELKNTLE RASLMSDGRS ISHDILFDRP
APPLSGQLDM AGSLRDYLNE CERDFIVHAL DGCQWQIQCC ADSLGISRKN LWEKMRKLEI
VKGSDAD
|
|---|
| |