| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3031 |
|---|
| Symbol | |
|---|
| ID | 3961006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3345724 |
|---|
| End bp | 3347334 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637917851 |
|---|
| Product | L-aspartate oxidase |
|---|
| Protein accession | YP_524273 |
|---|
| Protein GI | 89901802 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0029] Aspartate oxidase |
|---|
| TIGRFAM ID | [TIGR00551] L-aspartate oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCCA AAAATGTGAA CACCCCTTCC ACCCTTCATT TTGACGTGCT GATTGTCGGC
AGCGGCCTGG CTGGACTGAA CGCTGCCCTG CTGCTGGCGC CGACCCGGCG CGTGGCCGTG
ATCACCAAAC GCGCCATGAA AGAGGGCTCC AGCGGCTTGG CCCAAGGTGG CATTGCTGCC
GTTTGGGACA AAAACGACAG CTTTCAAGCC CACGTGGACG ACACCCTGGT GGCCGGCGCC
GGTCTGTGCG ACGTGGCTGC GACCCGTTTT GTGGTGGAGC AAGCGCCCCA GGCGATTGCC
TGGCTACAGA CCATGGGTGT GCCTTTTTCT GAAGAAAACG GCCGCCTGCA CCTCACCCGT
GAAGGTGGCC ACAGCGCGCG GCGCATTGCA CATGTGACCG ACGCTACCGG CGCCGCCGTC
CAGGACACCT TGATTGAGCG CGTGCGCCGG ACCCCCAACA TCACCCTGTT CGAGAACCAC
ACCCTGGTGG ACTTGATCAC CAGCGCCAAG CTGGACCCGC TGGGCAACCG CCAGGCCGGT
GCCAATCAGT GCCTGGGGCT CTATGCACTC GACGATGTCA CGGATGAGGT GATTACCTTC
GAGGCGCAGC ACACCATTTT GGCCACCGGC GGCGCTGGCA AGGTTTATCT GTACACAACC
AATCCCGACA CCGCCACCGG CGACGGCATT GCGGCGGCCT GGCGCGCGGG CTGCCGGGTG
CAGAACATGG AATTCATTCA ATTCCACCCG ACCTGTCTTT ACCACCCGCA CGCCAAGTCG
TTCCTGATCA GTGAGGCGGT GCGGGGCGAG GGCGGGCGCC TGCTGCTGCC CGATGGCACG
CGCTTCATGC CTCAGCACGA TGCACGCGCT GAGCTGGCAC CGCGCGATAT CGTGGCGCGT
GCCATTGACT TCGAAATGAA AAAGGGCGGG TTCGATTGCG TCTATCTCGA CATTTCACAC
CAGCCACTGG CCTTCCTGAA AGAACATTTC CCCAACATCT ACGCACGCTG TCTGGAACTG
GGAATTGATA TTTCCAAGCA GCCCATTCCC GTGGTTCCCG CCGCCCACTA CACCTGTGGT
GGCGTGTTGG CCGACCTGGA CGGACGCGCC GACCTGGGCG GTCTGTATGC CATCGGCGAA
ACCGCCTGCA GTGGCCTGCA TGGCGCCAAC CGGCTGGCCA GCAACTCACT GGTGGAGTGC
ATGGTGTTTG CGCGCGCCGC CACGCAGGTC ATCGATCAGA CCCCGGTGGC CAAGCCACGG
GAACTGCCCG CCTGGGACGA CAGCCGTGTG AGCGATGCGG ACGAGGCGGT GGTGATTTCA
CACAACTGGG ACGAGTTGCG CCGCTTCATG TGGGACTACG TCGGTATTGT GCGCACCAAC
AAACGGCTGG AGCGCGCCGC CCACCGCATC GCCCTGCTAC AGGGTGAAAT TCATGAGTTT
TACGCCGCCT TTCATGTCAC CCGCGACCTG CTGGAGTTGC GCAACCTGGT GCAGGTGGCG
GACCTGATCG TGCGTTCGGC CCAGTCCCGC CATGAGAGCC GCGGCTTGCA TTTCAGTCGC
GATTACCCGC AAACCGACGC AGTCGCCCAA CCAACCACGC TGGTGCCTTG A
|
|---|
| Protein sequence | MNAKNVNTPS TLHFDVLIVG SGLAGLNAAL LLAPTRRVAV ITKRAMKEGS SGLAQGGIAA
VWDKNDSFQA HVDDTLVAGA GLCDVAATRF VVEQAPQAIA WLQTMGVPFS EENGRLHLTR
EGGHSARRIA HVTDATGAAV QDTLIERVRR TPNITLFENH TLVDLITSAK LDPLGNRQAG
ANQCLGLYAL DDVTDEVITF EAQHTILATG GAGKVYLYTT NPDTATGDGI AAAWRAGCRV
QNMEFIQFHP TCLYHPHAKS FLISEAVRGE GGRLLLPDGT RFMPQHDARA ELAPRDIVAR
AIDFEMKKGG FDCVYLDISH QPLAFLKEHF PNIYARCLEL GIDISKQPIP VVPAAHYTCG
GVLADLDGRA DLGGLYAIGE TACSGLHGAN RLASNSLVEC MVFARAATQV IDQTPVAKPR
ELPAWDDSRV SDADEAVVIS HNWDELRRFM WDYVGIVRTN KRLERAAHRI ALLQGEIHEF
YAAFHVTRDL LELRNLVQVA DLIVRSAQSR HESRGLHFSR DYPQTDAVAQ PTTLVP
|
|---|
| |