| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3021 |
|---|
| Symbol | |
|---|
| ID | 3960368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3331610 |
|---|
| End bp | 3334513 |
|---|
| Gene Length | 2904 bp |
|---|
| Protein Length | 967 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637917841 |
|---|
| Product | glycine dehydrogenase |
|---|
| Protein accession | YP_524263 |
|---|
| Protein GI | 89901792 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
|---|
| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.482366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAGC CTGCCATGCC CACGACCTCT ACCCCCTCTC TGTCTGAACT AGAAAACCCC
TCTGAATTTA TCGCCCGCCA CATTGGCATT GATGCGGCCG ACGAAGCCGT CATGCTGCGC
GCTGTGGCTG CCACGTCGCG CGGCGCTTTG ATCGATGCCA TCGTGCCGCG CAGCATCGCG
CGTAGCCAGC CGATGGACAT CCCCGCGCCG ATTACCGAAG CCGCGGCACT GGCCGAGCTC
AAAGCCATGG CGGCCAAAAA CAAGGTGTTC AAGAGCTACA TCGGCCAGGG CTATTACGGC
ACCCACACGC CCGGCGTTAT TTTGCGCAAC ATCCTTGAAA ACCCGGCCTG GTACACCGCC
TACACGCCGT ACCAGGCCGA GATCAGCCAG GGCCGCATGG AGGCGCTGGT CAACTTTCAA
ACCATGGTGA TGGACTTGAC CGGCATGCCG ATGGCCAATG CCTCGATGCT GGACGAAGCC
ACTGCGGCGG CCGAGGCCAT GACCATGGCG CAGCGAGCCA GCAAATCCAA ATCGACCACA
TTCTTTGTCG ACGTTGAGGT GCTGCCACAA ACGCTGGCCG TGATCAAGAC CCGCGCCGAG
CCGCTGGGCA TTGAGGTCAA AACCTGCAAG GGCGATGAAG CCTTGGGGCA AGACAGCTTT
GCCGTGCTGC TGCAATACCC CGGTGTGAGC GGTGTGGTGC GTGATGACCG CGAGTGGATC
AAAGCCTACA AGGCCAAAGG CGGTATCGTC ATCATGGCCG CGGACCTGCT GGCGCTGACC
CTGCTCACCC CACCCGGTGA ACTGGGCGCG GACATTGCCG TGGGAACCAC GCAGCGTTTT
GGCACGCCGA TGGGCAACGG TGGCCCGCAC GCTGCCTACA TGGCGTGCCG CGACGAGTAC
AAACGCACCA TGCCCGGTCG CCTGGTGGGC GTGAGTGTCG ATGTGCACGG CAACCCGGCC
TACCGGCTGG CGCTGCAAAC GCGTGAGCAG CACATTCGCC GCGAAAAAGC CACCTCGAAC
ATCTGCACCG CGCAAGTGCT GCCCGCCGTG GTGGCGAGCA TGTTTGCCGT CTATCACGGG
CCCGCAGGTT TGAAGCGCAT TGCGCAGCGG GTGGCGGCTT TGACAGCGGT CTTGGCGCAA
GGCTTACTGG CCCTGGGTTA CAAAACAGCC AACACCAGCG CCTTTGACAC ACTCACGGTG
AACACCGGTG ATGCTACAAA TTCAATAGCT TCTAACGCCC TTTCCAAGGG GGCTAACCTG
CGATTTGCCT CAAACAATTC ATTAAGCGTG TCGCTGGACG AAACCAGCAC CCGCGTCGAT
GTGGAAGCGC TATGGCGTTT CTTTGCCAAG CCCGGACAAA CCGTGCCCCA GGTCAGTGAC
TTCGAGCAAG CCGCCAACAC CCTGCTGCCC GCTGCCCTGC TTCGCACCAG CAGCTACCTG
ACGCACCCGG TCTTCAACAC CCACCACAGT GAAACCGGCA TGCTGCGCTA CATCCGCCGC
CTCTCCGACC TTGACCTGGC GCTGGACCGC AGCATGATCC CGCTGGGCAG TTGCACCATG
AAGCTCAACG CCACGAGCGA GATGATTCCC ATCACCTGGC CCGAGTTTGC CGACATTCAC
CCCTTCTGCC CAGCGAATCA GCGCGAAGGC TATGCCGAGC TGGACGAGCA ACTGCGGGCC
TGGCTGTGCC AGGCCACCGG TTACGCCGGC ATCAGCCTGC AACCCAATGC CGGCAGCCAG
GGCGAATACG CGGGCATGAT GGCGATTCGT GGCTACCACG CCGCGCGTGG CCAGAGCCAG
CGCAACATCT GCCTGATTCC CTCCAGCGCC CACGGCACCA ACCCGGCCAG CGCCACCATG
GCCGGTTTCA AGGTCGTGGT GACCGCGTGT GATGCCAACG GCAATGTCGA CATGGTCGAC
CTGAAGACGA AGTGCGAGCA ATACAGCGCC AACCTGGGCG CGGTGATGAT CACCTACCCC
AGCACCCACG GCGTGTTTGA GACCAGCGTG AAAGACCTGT GCGCCTTGGT GCATTCCCAT
GGCGGGCGCG TTTACGTGGA CGGCGCGAAC ATGAACGCCC TGGTGGGCCT GGCCGCACCC
GGTGAGTTTG GCGGCGACGT GAGCCACCTG AACCTGCACA AAACCTTCTG CATCCCGCAC
GGCGGCGGCG GCCCCGGCGT CGGCCCGGTG TGCGTGGTGG CTGATTTGGT GCCGTTTTTG
CCTGCTCACG CTGACGCGAA CGGCATCGGC CCAGTCGCGG CTGCGCCATT GGGCAATGCC
TCGGTCCTGC CCATCAGTTG GATGTACTGC CGCATGATGG GCGCCGAGGG CTTGAAGGCC
GCCACCGAGG TCGCCATCCT GAGCGCCAAC TACATCAGCG TCCGGCTCAA AGACCACTAC
CCGACCCTCT ACACCAGCTC GCCAGAGGAC GGCAAGCCGG GCCGTGTCGC GCACGAGTGC
ATTCTGGATT TACGCCCCTT GAAAGAAACC AGTGGTGGTG TTCACGGCGT CAGCGCCGAA
GACGTGACCA AGCGCCTGAT GGACTATGGC TTTCATGCGC CCACCCTGAG CTTTCCGGTG
CCCGGCACGC TGATGGTGGA GCCCACCGAG AGTGAAACGC TCGATGAGCT GGACCGCTTC
ATCAACGCCA TGATCGCCAT CCGCGAAGAG ATTGCCAAGG TCGAGCAAGG TCTTTGGCCG
CAGGGCAACA ACCCGCTCAG CCACGCGCCG CATACGGCCG CAGCGCTCCT CGGCGAGGCC
TGGGATCGGC CCTATTCCAG AGAACTGGCG GCGTTCCCGG TGCCCAGCCT GAAATCATCC
AAATACTGGG TGCCGGTGGG CCGTATCGAC AACGTCCATG GCGACCGCAA TTTGTTCTGC
CGCTGTGTGC CGGTAAAGGA CTGA
|
|---|
| Protein sequence | MIEPAMPTTS TPSLSELENP SEFIARHIGI DAADEAVMLR AVAATSRGAL IDAIVPRSIA
RSQPMDIPAP ITEAAALAEL KAMAAKNKVF KSYIGQGYYG THTPGVILRN ILENPAWYTA
YTPYQAEISQ GRMEALVNFQ TMVMDLTGMP MANASMLDEA TAAAEAMTMA QRASKSKSTT
FFVDVEVLPQ TLAVIKTRAE PLGIEVKTCK GDEALGQDSF AVLLQYPGVS GVVRDDREWI
KAYKAKGGIV IMAADLLALT LLTPPGELGA DIAVGTTQRF GTPMGNGGPH AAYMACRDEY
KRTMPGRLVG VSVDVHGNPA YRLALQTREQ HIRREKATSN ICTAQVLPAV VASMFAVYHG
PAGLKRIAQR VAALTAVLAQ GLLALGYKTA NTSAFDTLTV NTGDATNSIA SNALSKGANL
RFASNNSLSV SLDETSTRVD VEALWRFFAK PGQTVPQVSD FEQAANTLLP AALLRTSSYL
THPVFNTHHS ETGMLRYIRR LSDLDLALDR SMIPLGSCTM KLNATSEMIP ITWPEFADIH
PFCPANQREG YAELDEQLRA WLCQATGYAG ISLQPNAGSQ GEYAGMMAIR GYHAARGQSQ
RNICLIPSSA HGTNPASATM AGFKVVVTAC DANGNVDMVD LKTKCEQYSA NLGAVMITYP
STHGVFETSV KDLCALVHSH GGRVYVDGAN MNALVGLAAP GEFGGDVSHL NLHKTFCIPH
GGGGPGVGPV CVVADLVPFL PAHADANGIG PVAAAPLGNA SVLPISWMYC RMMGAEGLKA
ATEVAILSAN YISVRLKDHY PTLYTSSPED GKPGRVAHEC ILDLRPLKET SGGVHGVSAE
DVTKRLMDYG FHAPTLSFPV PGTLMVEPTE SETLDELDRF INAMIAIREE IAKVEQGLWP
QGNNPLSHAP HTAAALLGEA WDRPYSRELA AFPVPSLKSS KYWVPVGRID NVHGDRNLFC
RCVPVKD
|
|---|
| |