Gene Rfer_3012 details

Gene Information

• Locus tag: Rfer_3012
• ID: 3960357
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 3320406
• End bp: 3322265
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637917832
• Product: diguanylate cyclase with PAS/PAC sensor
• Protein accession: YP_524254
• Protein GI: 89901783
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG2202] FOG: PAS/PAC domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.299906
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGATTTC GTAGAAACCC GCTGAGCATG GACGAATTGC GCGAACTCGC CCGCAAGCGA 
TTCCTGGGGC GCACCGCCAG CTCGGCCAAG GCCTTGAGCG TCGCGGAAGC ACAACGTCTA 
TTTGAAGAAC TCGAAATCCA TCAAATTGAG CTGGAGCTGC AAAACGAGCA CCTGAACACG 
ACCCGCATGC AACTGGAGTC GGCGCTCACG CAAAGCAATG AGTTCAACGA TTTTGCGCCG 
GTCGGCATTT TTTCGCTCGA CGCCGCCGGG ACCATCACCA AGTTGAATCT CGCCGGGGCC 
AGTCTGTTGG GCCGCGAGCG CGCCCGCCTG TTGGGGAGCC GGCTCGGGCT CTTCGTGGCC 
GACGTCGACC GCCCGCAGTT CAATGCCTTG CTGGCGCAGG CCACCAACTC CGGTGACGTG 
CAAAGCAGTG AGTTGACGTT TTCCAACAAA GGGCCGCTGG TCTCGCATGT GCAGATCAAG 
GTGGCAGGGT TGGGGCCGGC CCAGGGCTGG CAGATCATTC TGGTGGATAT CACCGAACGC 
AGGCTGGCAG AAGAACAGTT GCGCGCCAGC GAGGAACGCT GGAAGCTGGC GCTGGAGGCT 
GCCGGCGATG GTGTGTGGGA CTGGAACGTG GTGACGGGTG AGCAGATTTT TTCCAGGCGT 
TTCGAGCAAC TCTACGGTTT TGCCGAGAAA GAATACGGGC ACCACCTTGA TGACTGGGTT 
TCCCGCATCC ATCCCGACGA TAAGGATCGT GTGATCAGCG AGCATCAAGC GTGCCTGAGC 
GGCAAGACTG CCAGCACATT CATTGAATTC CGGGGCCAAT GCAAGGATGG CAGCTGGAAG 
TGGGTGCTTT CCCGCGGCGC CGTCGTCAGC CGCAACGCCC ACGGTAACGC CCAGCGCATG 
ATCGGCACGC ATGTCGACAT CAGCAAGCAA AAAATGACTG AAGAGGCCTT GCGGGTTGCC 
AGCCATTTCC AGCAGGCGGT GTTTGATTCC CTGGCGGCCC ATATCGCGGT GCTCGACCAG 
GCGGGTACGG TGATGCAAAC CAATGCGGCG TGGCGGCAAT ATACCGTTGA CAGCGGGTTT 
GCAGCGCGCC CCTGTTGCCA GGAGGGCAGC TATCTGAAAA TTCTCGGTTG CCTGACCGAA 
CAGGACCCTC AAACGGTGCA GGCCGCGCAG GCCGGCATCA CCGCGGTCCT GGCCGGCGAG 
CTGCCCTATT TTCAGCTGGT CCAGCCGTTT TTTACCCCGC TGGACAAGCG CTGGTTCAGC 
CTGAAAGTCA CACCGGTGCA CGATGGCGAG GAGCGACTGG TGGTCAGCCA TGAAGACGTG 
ACCCAAATCA AGACCGCCGA ATTGAACAGC CTGACGCTGG CCAATCGGGA CACCCTGACC 
GGCGCGCTGA GTCGACGCAA CTTCTTCAAC CTGGCCGAGC AGGAGGTGGT CCGCTCGATT 
CGCTATGCCT TGCCCCTGAT GGTGCTGATG CTGGACCTGG ATCATTTCAA GGTCATCAAC 
GACCGGTATG GCCATGCCGC AGGCGATGTG ATTCTGCAAA AGTTTGTGCA AAACGTGACC 
GGTGTGTTGC GCGAGTCCGA CCTGATTGGG CGCATCGGTG GCGAGGAGTT TGCGGTGTTG 
TTGCCCAATA CCCCGCTCGA AGGCGGGCGC GCACTGGCGC AGCGCATTGT TGAACGCGTT 
CGTGCCGACC CGGTGCAAGT CAATGGCCAC CTCATCGCGT ACACGGTCAG CATTGGCGCG 
GGCTGTCTGT CGAGCGAGAC TTCGTTTGCC GCTCTGTTGA GCCTGGCTGA CGCGGCGCTG 
TACCGAGCCA AGGACGGGGG GCGCGACCGC CTTGAAGTGG GGCCGGCTGG AGCCCCTTAG 

 

Protein sequence

MGFRRNPLSM DELRELARKR FLGRTASSAK ALSVAEAQRL FEELEIHQIE LELQNEHLNT 
TRMQLESALT QSNEFNDFAP VGIFSLDAAG TITKLNLAGA SLLGRERARL LGSRLGLFVA 
DVDRPQFNAL LAQATNSGDV QSSELTFSNK GPLVSHVQIK VAGLGPAQGW QIILVDITER 
RLAEEQLRAS EERWKLALEA AGDGVWDWNV VTGEQIFSRR FEQLYGFAEK EYGHHLDDWV 
SRIHPDDKDR VISEHQACLS GKTASTFIEF RGQCKDGSWK WVLSRGAVVS RNAHGNAQRM 
IGTHVDISKQ KMTEEALRVA SHFQQAVFDS LAAHIAVLDQ AGTVMQTNAA WRQYTVDSGF 
AARPCCQEGS YLKILGCLTE QDPQTVQAAQ AGITAVLAGE LPYFQLVQPF FTPLDKRWFS 
LKVTPVHDGE ERLVVSHEDV TQIKTAELNS LTLANRDTLT GALSRRNFFN LAEQEVVRSI 
RYALPLMVLM LDLDHFKVIN DRYGHAAGDV ILQKFVQNVT GVLRESDLIG RIGGEEFAVL 
LPNTPLEGGR ALAQRIVERV RADPVQVNGH LIAYTVSIGA GCLSSETSFA ALLSLADAAL 
YRAKDGGRDR LEVGPAGAP