| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3000 |
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| Symbol | |
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| ID | 3960345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3307705 |
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| End bp | 3309252 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637917820 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_524242 |
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| Protein GI | 89901771 |
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| COG category | [F] Nucleotide transport and metabolism
[L] Replication, recombination and repair |
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| COG ID | [COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[COG2169] Adenosine deaminase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACCCC ATCACGCACA GCCCGACGAC GACGCCTGCT ACCTCGCGCT CAGGGCGAAG
GACGCACGTT TTGACGGCTG CTTTTACACC GGCGTTACAT CTACCGGCAT TTATTGCCGT
CCGGTGTGCC GGGTACGCAC CCCCAAGCGT GAAAACTGCC GGTTTTTTGT TCACGCGGCG
CAGGCGGAAC AGGCCGGTTT TCGGCCCTGC CTGCGCTGCC GCCCGGAACT CGCACCGCGC
ACCTCTGCCC TCGGCCACGT GTTTGAAACC AAGCCGTGGT CCATCCAGGA CGCCTCCAGC
ATCTTGGCCA CTCAGGCGGC CCGCCTGCTG GACACACCGG AAGCCTGGAC CGAGAGCACA
CCGAGCGTGC AGCGGCTGGC CCAGCGCCTG GGCGTGAGCG ACCGCCACCT ACGCCGCATT
TTTGAAGCGC AGTTCGGCGT GTCGCCCCTG CAGTACCTGC AAACACAGCG CTTGCTGAGC
GCCAAACAGT TGCTGACCGA CACCGCACTG GCCGTCACGC AGGTCGCGCA CTTGAGTGGC
TTCACCAGTG TGCGGCGCTT CAATGCCGTG TTTGCCGCGC ACTACGCCCT CAGCCCGACG
CAGTTGCGCC GCAACGGCGC AAAACACGGG CACGATGCAC CCGGCCAGAG CCTTCAGGTC
CGGCTGGCCT ACCGCCCGCC CTATGACGTG GACGCCATGC TGCAGTTCTT TGGCAAACGC
CAGGTCACGG GGATTGAATG CGTCACGCTG GAGCCCGGCA ACCAGAGCAT CGGCAAAACC
GTGGCCGTGC AATGCGGCCA GACGCTCTAC ACCGGCTGGC TGGTGGCCCG CTTTGAGGCT
GCTGGCAACC GTGTGGATCT GCGCTTGAGT GATTCGCTGC GCGAGGTGCT GCCGTGGGTA
ATGGCGCGCG TGCGGGCCAT GCTCGATCTG GATGCGGATC CCCGCGCCAT CAGCAGCCTG
TTGCGCACCA GCTTCCCACG GGGCGACGGT TTGCGCGTGC CCGGCACCCT GGACGGCTTT
GAGCTGGCCG TGCGCGCCGT CCTGGGCCAA CAGATCACCG TGGCTGCGGC GCGCACCCTG
GCGGCAAGAC TGGTACAACG GTTTGGTGAA CCGATCGAAA CCCCGATCGC CGGGCTGAAC
CGGCTTTTTC CAAGCGCCGC GGCACTGGCC GCCGCCAGCG GCGACGCACT GGGCCAACTG
GGCATCGTCC GGCAGCGGCA AGCGGCCATT CAGGCCATCG CCAGCGCCGT GGCGGCGCAG
CGCCTGCCAC TGCACGCCGG GGCGGACGTG CCCTCCACCC TGGCCGCCCT GAAGGCTTTG
CCCGGCATTG GCGACTGGAC CGCCCAGTAC ATCGCCATGC GCGCACTGCG CTGGCCGGAC
GCCTTTCCGG CCGGCGACGT CGCCCTGCAC AAGGCACTGG GCGTGCAAGA CGCCAAAAAC
CCGGCCAAAG AAGCGCAGGC CGCGTCACTG GCCTGGCAAC CGTGGCGCAG CTACGCCGTG
ATCCGAGCCT GGGCCGCCCC ACCGGTTGCC GCAGATGCTA CAAAATAG
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| Protein sequence | MTPHHAQPDD DACYLALRAK DARFDGCFYT GVTSTGIYCR PVCRVRTPKR ENCRFFVHAA
QAEQAGFRPC LRCRPELAPR TSALGHVFET KPWSIQDASS ILATQAARLL DTPEAWTEST
PSVQRLAQRL GVSDRHLRRI FEAQFGVSPL QYLQTQRLLS AKQLLTDTAL AVTQVAHLSG
FTSVRRFNAV FAAHYALSPT QLRRNGAKHG HDAPGQSLQV RLAYRPPYDV DAMLQFFGKR
QVTGIECVTL EPGNQSIGKT VAVQCGQTLY TGWLVARFEA AGNRVDLRLS DSLREVLPWV
MARVRAMLDL DADPRAISSL LRTSFPRGDG LRVPGTLDGF ELAVRAVLGQ QITVAAARTL
AARLVQRFGE PIETPIAGLN RLFPSAAALA AASGDALGQL GIVRQRQAAI QAIASAVAAQ
RLPLHAGADV PSTLAALKAL PGIGDWTAQY IAMRALRWPD AFPAGDVALH KALGVQDAKN
PAKEAQAASL AWQPWRSYAV IRAWAAPPVA ADATK
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