| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2993 |
|---|
| Symbol | |
|---|
| ID | 3960338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3300350 |
|---|
| End bp | 3301375 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637917813 |
|---|
| Product | asparaginase |
|---|
| Protein accession | YP_524235 |
|---|
| Protein GI | 89901764 |
|---|
| COG category | [E] Amino acid transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0252] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D |
|---|
| TIGRFAM ID | [TIGR00520] L-asparaginases, type II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.740991 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCAA AATTTATTGA AAAAGTGCTT GTGTTGGCTA CCGGTGGCAC GATTGCCGGC
AGCGCAGCCA GCGCCGCCGA CAACATCGGC TACACCGCGG CCCAGGTCGG TGTGAGTCAA
TTGCTGGCGG CGGTGCCGGG GCTTGATCAG GTGTTGGCCG GGCGCACGCT GGAGGCCGAG
CAAGTGGCCC AGATTGACAG CAAGGACATG AGTTTCGCGG TTTGGCAGCA GTTGGCGCAG
CGGGTCAGTC ACCATTTGGC GCAAGCCGAC GTCACCGGCA TCGTCATCAC CCACGGCACC
GACACCTTGG AAGAAACGGC TTATTTTTTA CACGCCGTGC TGCCGGCGCG ACAGCTCGCA
GCCAAGCCGG TGGTCCTGAC CTGTGCCATG CGGCCAGCCT CCAGCGTGGC GCCGGATGGG
CCGCAAAATA TCAGGGATGC CGTTGTCGTG GCCACCACCA CCGGCGCTTG TGGCGTGCTG
GCCGTGTGTG CGGGTGCGGT GCATGCGGCG GCCGATGTGC AAAAGGTTCA CACCTACCGG
CTCGATGCCT TCAGTTCGGG TGACGCCGGG GCTGTGGCGT ATGTCGAGGA GGGTGCGGTG
CGTTTGGTAA AGAATTGGCC TCTAGCCCCC GTCGACCGGG CTCATGTAGC TATCGAAGAG
ATAGCGTCTG TGAGCCACTG GCCACGGGTG GAAATTGTGA TGAACTACGC GGGCGCCAGT
GGTGCGTTGG TGGATGCACT GCTGGCTCCG GTGTCTGCGG CTGGCGCGCA GGGTCAGACT
GATGCGCAAC TCGCGCAGGT GCCGTTGCGT GGCCTGGTGG TGGCCGGCAC CGGCAATGGC
ACCATTCATC AGGATTTGGA GGCAGCACTG CGCCGCGCGC AAGCACTTGG GGTCAGGGTG
GTGCGCTCAA CCCGCTGCGC CACTGGCCGT GTGCTGGCGA CAGAAAGTTC GGAATTTGCG
CATTCCAAGG GCCTGTCACC GGTCAAGGCC AGGATTGCGC TGATGCTGGA ACTGATGCAA
GCCTGA
|
|---|
| Protein sequence | MAAKFIEKVL VLATGGTIAG SAASAADNIG YTAAQVGVSQ LLAAVPGLDQ VLAGRTLEAE
QVAQIDSKDM SFAVWQQLAQ RVSHHLAQAD VTGIVITHGT DTLEETAYFL HAVLPARQLA
AKPVVLTCAM RPASSVAPDG PQNIRDAVVV ATTTGACGVL AVCAGAVHAA ADVQKVHTYR
LDAFSSGDAG AVAYVEEGAV RLVKNWPLAP VDRAHVAIEE IASVSHWPRV EIVMNYAGAS
GALVDALLAP VSAAGAQGQT DAQLAQVPLR GLVVAGTGNG TIHQDLEAAL RRAQALGVRV
VRSTRCATGR VLATESSEFA HSKGLSPVKA RIALMLELMQ A
|
|---|
| |