Gene Rfer_2959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_2959 
Symbol 
ID3962240 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp3266643 
End bp3267785 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content61% 
IMG OID637917778 
Productpeptidase S1 and S6, chymotrypsin/Hap 
Protein accessionYP_524201 
Protein GI89901730 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.528569 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGTT TCTGGTTGTT GTTTTCGCAA GCGGTCACCG TGGTGCTGGC AGCCTATTTT 
GTGGTTGGCA CACTCAAGCC CGATTGGCTG GCAAGCCGGT CAGCGAGTTC TAGCACCGTG
GCCTTGACGG AGGCGCCTGC CAGCAGTCCG GGCGTGGTGC CGCCAGGCAG TTTCAGACTG
GCGGCGCAAA AATCTTCTGC GGCGGTGGTC AGCATCAACA CCAGCAAGGC AGCCCGGAAT
GACCCGCGCA ACCAGGACCC GTGGTTCAGG TTCTTCTTTG GCGAGCAGGG CAATGAGCCG
CAGGTGGGTC TGGGCAGTGG CGTGATTGTG AGTGCCAGTG GCTATATCCT GACCAACAAC
CATGTGGTCG AGAGTGCCGA TGAAATTGAG GTCGTCCTGA ACGACAGTCG CCGTGCGCGG
GCCAAAGTGG TTGGCACCGA CCCGGAGACC GACCTGGCGG TCTTGAAGAT AGAACTCGAC
CGCCTGCCCG CGATTGTGCT GGGCAACTCC GATGCGCTTC AGGTGGGAGA CCAGGTGCTG
GCGATTGGCA ACCCTTTTGG TGTTGGGCAA ACCGTCACCA GCGGGATCAT CAGTGCGCTC
GGGCGCAATC AGTTGGGTAT CAACACCTTT GAGAACTTCA TCCAGACCGA TGCTGCCATC
AACCCCGGCA ACTCGGGGGG TGCGCTGGTG GATACCAGCG GCAATCTGCT GGGCATCAAC
ACGGCGATCT ATTCGCGCTC GGGCGGCAGC ATGGGCATTG GTTTCGCCAT ACCCGTGGCG
ACCGCCAAAC TGGTGCTGGA AGGCATTGTG AAGGATGGGC AGGTCACACG CGGCTGGATT
GGCGTGGAGC CCAACGATTT GTCGCCCGAA CTGGCTGAAA CCTTTGGCGT CAAGGCCAAA
GAAGGGGTGA TCATCACCGG GGTGCTGCAA GATGGACCAG CGGCGCGAGC CGGCATCAAG
CCCGGTGATG TGATTACCCA GGTGGCGGGC AAGCCGGTCG GCAATGTGGC AGATTTACTG
AGCAGTGTTG CTGCCTTGAA ACCCGGGACA GCGTCCAAAT TCAGCGTGCT GCGCCGTGAC
AGCCAGGTTG AGTTGGCCGT GACGCCCAGT GTGCGGCCCA AACAGCGCCG GCCAGCGCCC
TAA
 
Protein sequence
MKRFWLLFSQ AVTVVLAAYF VVGTLKPDWL ASRSASSSTV ALTEAPASSP GVVPPGSFRL 
AAQKSSAAVV SINTSKAARN DPRNQDPWFR FFFGEQGNEP QVGLGSGVIV SASGYILTNN
HVVESADEIE VVLNDSRRAR AKVVGTDPET DLAVLKIELD RLPAIVLGNS DALQVGDQVL
AIGNPFGVGQ TVTSGIISAL GRNQLGINTF ENFIQTDAAI NPGNSGGALV DTSGNLLGIN
TAIYSRSGGS MGIGFAIPVA TAKLVLEGIV KDGQVTRGWI GVEPNDLSPE LAETFGVKAK
EGVIITGVLQ DGPAARAGIK PGDVITQVAG KPVGNVADLL SSVAALKPGT ASKFSVLRRD
SQVELAVTPS VRPKQRRPAP