Gene Rfer_2921 details

Gene Information

• Locus tag: Rfer_2921
• ID: 3960438
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 3231799
• End bp: 3232470
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637917740
• Product: pilus assembly protein, PilO
• Protein accession: YP_524163
• Protein GI: 89901692
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3167] Tfp pilus assembly protein PilO

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGCA AACCCGCATT GAATTTCGAT TTTCCGGCCC TGCAGGAAAA GCTATTTCGT 
CAATTTCGCA ACCTCGATCC CAAAGACCCA TCCAACTGGC CCGCGCTTCC GCGCTATCTG 
ATGTTTGCCG CCATTGCCGC CCTGGTCGTG GTGATACTTT GGTTTCTGTG GCTCAACACC 
TCTGAAGAAG AATTAGCTAC CGAGCAGGCC ACTGAAGTCA AGCTGCGCGA AGAGTACAAG 
GTCAAGCTGG GTAAGGCGGT CAACCTCGAG GCGCTGAAAA AGCAACGCGA GCAGGTTCTG 
CAGTATGTAA CTCAGCTGGA GAAGCAACTC CCCAGCAAAG CCGAGATGGA CGCTTTGCTG 
TCCGACATCA ATCAGGCCGG CTTGGGGCGC AGCCTCCAGT TCGATCTATT TCGCCCCGGG 
CAAGTGACTG TCAAGGATTA CTATGCCGAG TTACCCATTG CCGTGCGTGT CACCGGTCGC 
TATCACGACA TCGGCGCTTT TGCGTCAGAC ATTGCCAACC TTTCCCGCAT CGTGACACTC 
AACAATTTAA CGATCTTGCC GGGCAAAGAA GGAACTTTGG CGATGGACGC CACGGCCAAG 
ACTTTCCGTT ATCTGGATGC CGATGAAGTG GCGGCGCAGC GCAAGGCAGC TCCGAAAGGA 
GCCAAGAAAT GA 

 

Protein sequence

MASKPALNFD FPALQEKLFR QFRNLDPKDP SNWPALPRYL MFAAIAALVV VILWFLWLNT 
SEEELATEQA TEVKLREEYK VKLGKAVNLE ALKKQREQVL QYVTQLEKQL PSKAEMDALL 
SDINQAGLGR SLQFDLFRPG QVTVKDYYAE LPIAVRVTGR YHDIGAFASD IANLSRIVTL 
NNLTILPGKE GTLAMDATAK TFRYLDADEV AAQRKAAPKG AKK