Gene Rfer_2920 details

Gene Information

• Locus tag: Rfer_2920
• ID: 3960437
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 3231151
• End bp: 3231786
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637917739
• Product: fimbrial assembly
• Protein accession: YP_524162
• Protein GI: 89901691
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3166] Tfp pilus assembly protein PilN

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATATTGA TCAATCTACT GCCGCATCGC GAAGCTGCGC GCAAACTTCG CAAAGACGTT 
TTCAATGTTA GTTTGGGGTT GGCCGCCCTT GCGGGCGGCT TACTGGCTGG CATTATTTTT 
CTTGCCTTCC AGTCCCTGAT TTCCGATCAG CAAGGCCGAA ATCAGCTGTT GCAGACCGAG 
ATCAAACGTT TTGACGCCCA AATCAAGGAG ATCGCCGGTC TCGAATCCGA GATTACCGCC 
TTGCGGGCGC GCCAGCAGGC TGTTGAAGAC TTGCAGGCCG ACCGAAATTT GCCGGTCCAT 
CTGCTGACCG AACTGGTCAA GCAGCTGCCC GATGGGGTCT ACATCGTGAG CATGCGCCAG 
GACAACCAGA CGGTAACGCT GCAAGGTGTT GCGCAGTCCA ATGAGCGCGT GTCCGAGCTG 
TTGCGTAATC TCGGCAACAA CACACCCTGG TTTTCCAAGC CGGAGTTGGT TGAAATCGTG 
GCAGGCACTG TCACACTCGC GCCCCGGGAG CAGCGACGCG TTGCCAATTT CACCATCCGC 
GTTCGTTTGA TGCGCGCCAG CGAAGCTGAG AAGTCACGCG TTGCGGCAGC TACTGCAAAC 
CCGGTGCCCG TTGCCGCAAC TCCTGTCAAG AAATAG 

 

Protein sequence

MILINLLPHR EAARKLRKDV FNVSLGLAAL AGGLLAGIIF LAFQSLISDQ QGRNQLLQTE 
IKRFDAQIKE IAGLESEITA LRARQQAVED LQADRNLPVH LLTELVKQLP DGVYIVSMRQ 
DNQTVTLQGV AQSNERVSEL LRNLGNNTPW FSKPELVEIV AGTVTLAPRE QRRVANFTIR 
VRLMRASEAE KSRVAAATAN PVPVAATPVK K