| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2916 |
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| Symbol | |
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| ID | 3960433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3225572 |
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| End bp | 3226873 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637917735 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_524158 |
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| Protein GI | 89901687 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0948953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACTCC AAAATCCTCC CGGCCAGCCC CATTTTGCCT ACCGGGGCAA TGAACTTTTT
TGTGAAGAAA TTCGCTTGAG TGATCTGGTA CGAGCCCACG GTACCCCGCT TTTCGTCTAT
TCGAAAAGCG CCATGCTGGC GGCACTGGCC GCTTACCAGC GTGGCTTCGC CGGGCGCAAC
GTGCAGATCT GTTACGCCAT GAAAGCCAAT CCGGCACTCG GCGTGATTCA GGTTTTTGCC
GAAGCGGGCT GCGGTTTTGA CATTGTCTCG GGCGGTGACA TGGACCGTGT GCTGGCCGCG
GGTGGTCGGG CTGAAAAAAT AATTTTCTCG GGCGTCGGCA AGACCCGTGC GGAAATGCGG
CGTGCGTTAC GGGCCGGCAT TGGCTGTTTC AACGTCGAGA GTGAAGCGGA GCTTGAAGTT
CTGAGCGAGG TGGCTTTGTC CATGGGGGTG GCGGCACCGG TGAGCATCCG CGTCAATCCC
AATGTGGACC CCAAGACTCA CCCCTACATT TCCACCGGTC TCAAGGACAG CAAGTTCGGC
GTGGCGCATG AACGCGTGCT GCCGACTTAC CAGCGGGCCG TGAAGCTGGC CGGCGTTCGG
GTGGTCGGTA TCGATTGCCA CATCGGCTCA CAGATCACGC AGGAGGGACC TTATCTGGAT
GCAGTGGACC GTATGCTGGA TCTGGTGGAA GCGATTGAGG CGGCGGGCAT TCCCCTTCAT
CACATCGATT TTGGCGGTGG CCTGGGCATT GATTACCACG GCGAGACACC GCCCGATGCC
GGGCTTCTCT GGCAAAAGCT GTTGGCTCGT CTCGATGCGC GCGGCTTTGG CCAGCGGCAT
TTGATGATCG AGCCGGGGCG CTCGCTGGTG GGCAATGCCG GGGTGTGCCT GTCGGAGGTG
CTGTATCTCA AACCCGGCGA GCAAAAAAAC TTCTGCATCA TCGACGCCGC CATGAACGAC
TTGCCGCGCC CGGCCATGTA CCAGGCGTTC CACCAGATCG TGCCGTTGAA CCGGCGCCCG
GGTGCCCCGG ACACTTACGA CGTGGTGGGC CCCATCTGTG AGAGCGGCGA CTGGATCGGG
CATGACCGCT CCCTGGCGGT GCAGCCGGGC GACCTGCTGG CGGTGCTGTC AGCAGGGGCC
TACTGCATGA GCATGGCCAG CAACTACAAC TCGCGCGGAC GTGCTGCAGA AATTCTGGTG
GACGGTGCCC AAGCCTACGT TATTCGGCAA CGTGAAACGA TTGCGGATCA GATGCAAGGT
GAAAGTCTGG TCGGTCAGAT GCCAACTACG CTATTTATTT GA
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| Protein sequence | MTLQNPPGQP HFAYRGNELF CEEIRLSDLV RAHGTPLFVY SKSAMLAALA AYQRGFAGRN
VQICYAMKAN PALGVIQVFA EAGCGFDIVS GGDMDRVLAA GGRAEKIIFS GVGKTRAEMR
RALRAGIGCF NVESEAELEV LSEVALSMGV AAPVSIRVNP NVDPKTHPYI STGLKDSKFG
VAHERVLPTY QRAVKLAGVR VVGIDCHIGS QITQEGPYLD AVDRMLDLVE AIEAAGIPLH
HIDFGGGLGI DYHGETPPDA GLLWQKLLAR LDARGFGQRH LMIEPGRSLV GNAGVCLSEV
LYLKPGEQKN FCIIDAAMND LPRPAMYQAF HQIVPLNRRP GAPDTYDVVG PICESGDWIG
HDRSLAVQPG DLLAVLSAGA YCMSMASNYN SRGRAAEILV DGAQAYVIRQ RETIADQMQG
ESLVGQMPTT LFI
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