| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2902 |
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| Symbol | |
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| ID | 3963382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3211403 |
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| End bp | 3213136 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637917721 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_524144 |
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| Protein GI | 89901673 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCTG TCGACACCTC GTCTCGAGAA TCCCCCGCCA CGGCCCTTCC GGGCTTGGGC
CGCGCCCTCA TCCTGGCGGG GAAACTGGGG CAAAAATCAG CAGAAGAAAT CTACCGCAAA
GCCCAGAGCG CCCGCACCAG CTTTATTGCC GAGCTCACCG GCTCGGGCGC TGTGTCGGCC
TCTGACCTGG CGCACACCAT GTCGACAGCC TATGCAGCAC CGTTGGTGGA CATGGCCGCC
ATTGACCCGC AACGCCTGCC CAAGGGCTTG CTGGATGTAA AAATCTGCCA TGACTACCGC
GTGGTGGTCT TGAGCAAACG AAATAACAGG CTGATCGTTG CGACCGCTGA CCCCTCCGAC
AGCCAGGCGG CCGAAAAAAT CAAGTTTGCC ACCCAGTTGG GCGTTGACTG GGTCGTTGCC
GAATACGACA AGCTGCTGCA ACTGGTCACC GCCAACGCCA TCACCGCGTC GGAAACGATG
GAGCACATCA TTGGGGACGA CTTCGAGTTC GATGAGGCTT CGACAGAGGC CTTGACGGAA
AGCTCGGACA CGTCAAGCTC CGAAGTTGAG GACGCGCCAG TTGTCAAGTT TTTACACAAG
ATGCTGCTGG ACGCCTTCAG CATGCGTGCG TCCGATCTGC ACTTTGAACC GTATGAGCAC
AACTACCGTG TCCGCTTCCG TATTGACGGG GAACTGAGAG AGATCGCCTC GCCTCCGATT
GCCATCAAGG ACAAGCTGGC GTCGCGCATC AAAGTGATTT CCAGAATGGA CATCTCTGAA
AAACGCGTCC CGCAAGACGG CAAGATGAAG CTCAAGATTG GCCCGGAAAG GGTGATCGAC
TTCCGGGTCA GCACCTTGCC CACGCTGTTC GGCGAGAAAA TTGTGATCCG CATACTGGAC
CCCGGCAGCG CCAAGCTGGG CATTGAAGCA CTGGGTTACG AGCCCGAGGA AAAAGAAAGG
CTGCTGCAGG CCATTGGGCG ACCGTACGGC ATGATCCTGG TCACCGGGCC AACCGGCTCA
GGCAAGACAG TCTCTCTGTA CACCTGCCTG AACATGCTGA ACAAGCCGGG GGTCAACATC
GCGACGGCCG AAGACCCTTG CGAAATCAAT TTGCCGGGCG TTAACCAGGT TAACGTCAAC
GACAAAGCCG GACTCACCTT TGCGGTCGCG CTCAAATCAT TTCTGAGGCA AGACCCCGAC
ATCATCATGG TCGGCGAAAT TCGCGATCTT GAAACGGCTG ACATCTCGAT CAAGGCCGCC
CAGACCGGTC ACCTGGTGCT CTCCACACTC CACACCAACG ACGCACCCAC CACGCTGACG
CGCATGCGCA ACATGGGTAT TGCCCCTTTC AACATTGCGT CCAGCGTGAT CCTGATTACG
GCGCAGCGGC TCGCGCGGCG CCTGTGCCCG AATTGCAAAA CCCCGATCGA GATTCCCCGC
AAGGCCTTGA TTGATGCCGG CTACCAGGAC GATGAATTCC AGGCGCCCTG GATCAGCTAC
CGAGCGGTGG GTTGCTCCAT GTGCAACAAC GGCTACAAAG GACGCGTAGG TATTTATCAA
GTGATGCCGG TCAGCGAGGA GATTCAACGC ATCATCCTGC GTGATGGCAG CGCGCTGGAA
ATCGCCGAGC AAGCCAAACG CGAAGGTGTG CGATCGCTGC GGCAGGCCGG GCTGCACAAA
GCCAAGTTGG GCCTGACTTC ACTCGAAGAA GTGCTCGCCG TGACCAACGA ATGA
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| Protein sequence | MTAVDTSSRE SPATALPGLG RALILAGKLG QKSAEEIYRK AQSARTSFIA ELTGSGAVSA
SDLAHTMSTA YAAPLVDMAA IDPQRLPKGL LDVKICHDYR VVVLSKRNNR LIVATADPSD
SQAAEKIKFA TQLGVDWVVA EYDKLLQLVT ANAITASETM EHIIGDDFEF DEASTEALTE
SSDTSSSEVE DAPVVKFLHK MLLDAFSMRA SDLHFEPYEH NYRVRFRIDG ELREIASPPI
AIKDKLASRI KVISRMDISE KRVPQDGKMK LKIGPERVID FRVSTLPTLF GEKIVIRILD
PGSAKLGIEA LGYEPEEKER LLQAIGRPYG MILVTGPTGS GKTVSLYTCL NMLNKPGVNI
ATAEDPCEIN LPGVNQVNVN DKAGLTFAVA LKSFLRQDPD IIMVGEIRDL ETADISIKAA
QTGHLVLSTL HTNDAPTTLT RMRNMGIAPF NIASSVILIT AQRLARRLCP NCKTPIEIPR
KALIDAGYQD DEFQAPWISY RAVGCSMCNN GYKGRVGIYQ VMPVSEEIQR IILRDGSALE
IAEQAKREGV RSLRQAGLHK AKLGLTSLEE VLAVTNE
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